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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7145-RA through 18771 annotations produced 1 hits



(CG7145):

Annotation Number : CG7145
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037138
Gbrowse : chr3L:21829989-21834464 (-) // 100.0 //
Probeset : 1624726_s_at
Accessions : protein= NP_649368; /// NP_730695; /// NP_730698;, nucleotide= NM_141111; /// NM_168942; /// NM_168945;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix /
Interpro : 0003842 // 1-pyrroline-5-carboxylate dehydrogenase activity // inferred from sequence or structural similarity /// 00038
FlyMine data for FBgn0037138.
Homophila reports that CG7145 is a close match (1e-12) to human gene ALDH10;ALDH3A2;FALDH;SLS (NP_000373), a gene associated with Sjogren-Larsson syndrome, 270200 (3).
BioGrid reports that CG7145 interacts with CG9183 .
TRiP has 1 RNAi stocks for FBgn0037138 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037138 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1428 424 of 4 3.30Up
Head1019 214 of 4 2.40Up
Eye1044 654 of 4 2.45Up
Thoracicoabdominal ganglion1736 464 of 4 4.10Up
Salivary gland1288 174 of 4 3.02Up
Crop939 314 of 4 2.20Up
Midgut83 44 of 4 0.20Down
Tubule54 44 of 4 0.10Down
Hindgut976 174 of 4 2.30Up
Heart559 584 of 4 1.31None
Fat body269 464 of 4 0.63Down
Ovary462 144 of 4 1.10None
Testis208 64 of 4 0.50Down
Male accessory glands489 184 of 4 1.10None
Virgin spermatheca229 154 of 4 0.54Down
Mated spermatheca220 274 of 4 0.52Down
Adult carcass486 414 of 4 1.10None
Larval CNS983 624 of 4 2.30Up
Larval Salivary gland870 424 of 4 2.04Up
Larval midgut126 184 of 4 0.30Down
Larval tubule22 23 of 4 0.10Down
Larval hindgut1696 384 of 4 3.97Up
Larval fat body79 164 of 4 0.20Down
Larval trachea538 404 of 4 1.26Up
Larval carcass1673 2404 of 4 3.92Up
S2 cells (growing)356 244 of 4 0.83None
Whole fly426 264 of 4

Looking for CG7145-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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