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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7156-RA through 18771 annotations produced 1 hits



(CG7156):

Annotation Number : CG7156
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038588
Gbrowse : chr3R:14065141-14067906 (-) // 100.0 //
Probeset : 1628552_at
Accessions : protein= NP_650697; /// NP_996229;, nucleotide= NM_142440; /// NM_206507;
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // non-
FlyMine data for FBgn0038588.
BDGP gene expression has embryonic in situ data for CG7156: 20 pix of staining in 7 body parts.
Homophila reports that CG7156 is a close match (2e-12) to human gene PKCC;PKCG;PRKCG;SCA14 (NP_002730), a gene associated with Spinocerebellar ataxia 14, 605361 (3).
BioGrid reports that CG7156 interacts with CG7942 .
TRiP has 2 RNAi stocks for FBgn0038588 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038588 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 ± 74 of 4 0.90None
Head60 ± 44 of 4 0.50Down
Eye77 ± 54 of 4 0.60None
Thoracicoabdominal ganglion79 ± 54 of 4 0.60None
Salivary gland73 ± 54 of 4 0.57None
Crop70 ± 44 of 4 0.50None
Midgut30 ± 14 of 4 0.20Down
Tubule49 ± 14 of 4 0.40Down
Hindgut67 ± 24 of 4 0.50None
Heart47 ± 44 of 4 0.37Down
Fat body35 ± 14 of 4 0.27Down
Ovary249 ± 114 of 4 1.90Up
Testis112 ± 84 of 4 0.90None
Male accessory glands32 ± 64 of 4 0.20Down
Virgin spermatheca22 ± 14 of 4 0.17Down
Mated spermatheca29 ± 14 of 4 0.23Down
Adult carcass40 ± 34 of 4 0.30Down
Larval CNS115 ± 94 of 4 0.90None
Larval Salivary gland22 ± 04 of 4 0.18Down
Larval midgut32 ± 24 of 4 0.25Down
Larval tubule48 ± 44 of 4 0.40Down
Larval hindgut41 ± 14 of 4 0.32Down
Larval fat body32 ± 83 of 4 0.20Down
Larval trachea57 ± 84 of 4 0.44Down
Larval carcass32 ± 24 of 4 0.25Down
S2 cells (growing)78 ± 24 of 4 0.61None
Whole fly129 ± 204 of 4

Looking for CG7156-RA. 1 entries matched from 18771, in 5 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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