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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7158-RA through 18771 annotations produced 1 hits



(CG7158):

Annotation Number : CG7158
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037116
Gbrowse : chr3L:21667493-21672831 (-) // 100.0 //
Probeset : 1634116_at
Accessions : protein= NP_649347;, nucleotide= NM_141090;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037116.
Homophila reports that CG7158 is a close match (6e-45) to human gene ALS2;ALSJ;IAHSP;PLSJ (NP_065970), a gene associated with Amyotrophic lateral sclerosis, juvenile, 205100 (3);Primary lateral sclerosis, juvenile, 606353 (3);Spastic paralysis, infantile onset ascending, 607225 (3).
TRiP has 1 RNAi stocks for FBgn0037116 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037116 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain246 74 of 4 2.30Up
Head143 74 of 4 1.30Up
Eye209 94 of 4 1.94Up
Thoracicoabdominal ganglion197 54 of 4 1.80Up
Salivary gland209 54 of 4 1.94Up
Crop135 44 of 4 1.30Up
Midgut145 44 of 4 1.30Up
Tubule215 64 of 4 2.00Up
Hindgut155 34 of 4 1.40Up
Heart136 14 of 4 1.26Up
Fat body120 34 of 4 1.12None
Ovary235 44 of 4 2.20Up
Testis54 14 of 4 0.50Down
Male accessory glands127 44 of 4 1.20None
Virgin spermatheca152 34 of 4 1.41Up
Mated spermatheca140 84 of 4 1.31Up
Adult carcass103 64 of 4 1.00None
Larval CNS118 114 of 4 1.10None
Larval Salivary gland178 64 of 4 1.66Up
Larval midgut227 54 of 4 2.11Up
Larval tubule267 94 of 4 2.50Up
Larval hindgut140 114 of 4 1.30None
Larval fat body101 84 of 4 0.90None
Larval trachea177 134 of 4 1.65Up
Larval carcass134 74 of 4 1.24None
S2 cells (growing)128 44 of 4 1.19None
Whole fly107 84 of 4

Looking for CG7158-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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