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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7173-RA through 18771 annotations produced 1 hits



(CG7173):

Annotation Number : CG7173
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037099
Gbrowse : chr3L:21548747-21551321 (-) // 100.0 //
Probeset : 1631946_at
Accessions : protein= NP_649330;, nucleotide= NM_141073;
FlyMine data for FBgn0037099.
BDGP gene expression has embryonic in situ data for CG7173: 17 pix of staining in 4 body parts.
BioGrid reports that CG7173 interacts with CG7655 CG7954 CG8062 CG8745 CG9296 .
VDRC has 2 RNAi stocks for FBgn0037099 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.30None
Head3 ± 10 of 4 0.40None
Eye2 ± 10 of 4 0.31Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.40None
Salivary gland8 ± 30 of 4 0.88None
Crop3 ± 10 of 4 0.40Down
Midgut4 ± 10 of 4 0.40None
Tubule5 ± 01 of 4 0.60Down
Hindgut6 ± 10 of 4 0.70None
Heart1 ± 00 of 4 0.17Down
Fat body4 ± 10 of 4 0.49None
Ovary2 ± 10 of 4 0.20Down
Testis2 ± 00 of 4 0.30Down
Male accessory glands6 ± 20 of 4 0.70None
Virgin spermatheca4 ± 10 of 4 0.50None
Mated spermatheca7 ± 20 of 4 0.74None
Adult carcass3 ± 10 of 4 0.30Down
Larval CNS4 ± 11 of 4 0.47None
Larval Salivary gland5 ± 21 of 4 0.53None
Larval midgut10 ± 01 of 4 1.06None
Larval tubule13 ± 14 of 4 1.40None
Larval hindgut5 ± 10 of 4 0.53None
Larval fat body4 ± 20 of 4 0.50None
Larval trachea7 ± 12 of 4 0.81None
Larval carcass9 ± 31 of 4 1.03None
S2 cells (growing)2 ± 00 of 4 0.30Down
Whole fly9 ± 13 of 4

Looking for CG7173-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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