FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7182-RA through 18771 annotations produced 1 hits

(CG7182):

Annotation Number : CG7182
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035878
Gbrowse : chr3L:8337517-8339430 (-) // 100.0 //
Probeset : 1624267_at
Accessions : protein= NP_648212;, nucleotide= NM_139955;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0035878.
BDGP gene expression has embryonic in situ data for CG7182: 16 pix of staining in 19 body parts.
BioGrid reports that CG7182 interacts with CG7528 CG7191 .
VDRC has 2 RNAi stocks for FBgn0035878 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	39 ± 1	4 of 4	0.20	Down
Head	38 ± 1	4 of 4	0.20	Down
Eye	30 ± 2	4 of 4	0.19	Down
Thoracicoabdominal ganglion	36 ± 2	4 of 4	0.20	Down
Salivary gland	57 ± 6	3 of 4	0.35	Down
Crop	60 ± 2	4 of 4	0.40	Down
Midgut	49 ± 4	4 of 4	0.30	Down
Tubule	76 ± 9	4 of 4	0.50	Down
Hindgut	51 ± 1	4 of 4	0.30	Down
Heart	41 ± 2	4 of 4	0.25	Down
Fat body	48 ± 3	4 of 4	0.30	Down
Ovary	286 ± 3	4 of 4	1.70	Up
Testis	264 ± 4	4 of 4	1.60	Up
Male accessory glands	79 ± 4	4 of 4	0.50	Down
Virgin spermatheca	42 ± 3	4 of 4	0.26	Down
Mated spermatheca	47 ± 3	4 of 4	0.29	Down
Adult carcass	39 ± 3	4 of 4	0.20	Down
Larval CNS	128 ± 10	4 of 4	0.78	Down
Larval Salivary gland	102 ± 4	4 of 4	0.62	Down
Larval midgut	53 ± 6	4 of 4	0.32	Down
Larval tubule	25 ± 1	3 of 4	0.20	Down
Larval hindgut	90 ± 8	4 of 4	0.55	Down
Larval fat body	48 ± 12	4 of 4	0.30	Down
Larval trachea	97 ± 25	4 of 4	0.60	Down
Larval carcass	118 ± 24	4 of 4	0.72	None
S2 cells (growing)	162 ± 2	4 of 4	0.99	None
Whole fly	164 ± 8	4 of 4

Looking for CG7182-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720