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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7197-RA through 18771 annotations produced 1 hits



(CG7197):

Annotation Number : CG7197
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035866
Gbrowse : chr3L:8291594-8292873 (-) // 100.0 //
Probeset : 1637106_at
Accessions : protein= NP_648201;, nucleotide= NM_139944;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0035866.
BDGP gene expression has embryonic in situ data for CG7197: 4 pix of staining in 1 body parts.
Homophila reports that CG7197 is a close match (1e-16) to human gene CMRD;SAR1B;SARA2 (NP_057187), a gene associated with Anderson disease, 607689 (3);Chylomicron retention disease, 246700 (3).
TRiP has 1 RNAi stocks for FBgn0035866 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035866 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 ± 24 of 4 0.70Down
Head135 ± 54 of 4 0.70Down
Eye128 ± 54 of 4 0.68Down
Thoracicoabdominal ganglion107 ± 24 of 4 0.60Down
Salivary gland87 ± 54 of 4 0.46Down
Crop146 ± 54 of 4 0.80None
Midgut82 ± 54 of 4 0.40Down
Tubule145 ± 24 of 4 0.80Down
Hindgut215 ± 84 of 4 1.10None
Heart103 ± 34 of 4 0.55Down
Fat body120 ± 104 of 4 0.64Down
Ovary381 ± 84 of 4 2.00Up
Testis62 ± 04 of 4 0.30Down
Male accessory glands115 ± 64 of 4 0.60Down
Virgin spermatheca120 ± 74 of 4 0.64Down
Mated spermatheca116 ± 54 of 4 0.61Down
Adult carcass119 ± 94 of 4 0.60Down
Larval CNS134 ± 74 of 4 0.71Down
Larval Salivary gland65 ± 54 of 4 0.34Down
Larval midgut74 ± 24 of 4 0.39Down
Larval tubule118 ± 44 of 4 0.60Down
Larval hindgut113 ± 34 of 4 0.60Down
Larval fat body175 ± 104 of 4 0.90None
Larval trachea95 ± 144 of 4 0.50Down
Larval carcass78 ± 54 of 4 0.41Down
S2 cells (growing)108 ± 24 of 4 0.57Down
Whole fly189 ± 154 of 4

Looking for CG7197-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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