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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7204-RA through 18771 annotations produced 1 hits



Neu2 (Neu2):

Annotation Number : CG7204
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037085
Gbrowse : chr3L:21481952-21483101 (-) // 100.0 //
Probeset : 1636710_at
Accessions : protein= NP_649316;, nucleotide= NM_141059;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037085.
Homophila reports that CG7204 is a close match (7e-11) to human gene ACLS;GLI3;PAPA;PAPB (NP_000159), a gene associated with Acrocallosal syndrome, 200990 (3);Greig cephalopolysyndactyly syndrome, 175700 (3);Pallister-Hall syndrome, 146510 (3);Polydactyly, postaxial, types A1 and B, 174200 (3);Polydactyly, preaxial, type IV, 174700 (3);{Hypothalamic hamartomas, somatic}, 241800 (3).
BioGrid reports that CG7204 interacts with CG7386 .
VDRC has 2 RNAi stocks for FBgn0037085 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.20None
Head3 ± 10 of 4 2.60None
Eye2 ± 00 of 4 2.36None
Thoracicoabdominal ganglion1 ± 10 of 4 1.60None
Salivary gland4 ± 10 of 4 3.81None
Crop3 ± 10 of 4 3.10None
Midgut4 ± 10 of 4 3.70None
Tubule6 ± 01 of 4 5.40Up
Hindgut3 ± 00 of 4 2.90None
Heart1 ± 00 of 4 0.87None
Fat body5 ± 33 of 4 4.85None
Ovary0 ± 00 of 4 0.70None
Testis6 ± 12 of 4 5.70Up
Male accessory glands5 ± 20 of 4 5.00None
Virgin spermatheca6 ± 00 of 4 5.32Up
Mated spermatheca7 ± 02 of 4 6.09Up
Adult carcass8 ± 21 of 4 7.30Up
Larval CNS1 ± 01 of 4 1.49None
Larval Salivary gland3 ± 10 of 4 2.94None
Larval midgut4 ± 10 of 4 3.74None
Larval tubule3 ± 10 of 4 2.60None
Larval hindgut1 ± 00 of 4 1.49None
Larval fat body3 ± 10 of 4 3.00None
Larval trachea3 ± 11 of 4 3.36None
Larval carcass2 ± 00 of 4 1.70None
S2 cells (growing)2 ± 01 of 4 2.36None
Whole fly1 ± 00 of 4

Looking for CG7204-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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