Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7219-RA through 18771 annotations produced 1 hits



Dm-serpin-28D (Spn28D):

Annotation Number : CG7219
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031973
Gbrowse : chr2L:8004650-8007132 (-) // 100.0 //
Probeset : 1636145_at
Accessions : protein= NP_609172;, nucleotide= NM_135328;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0031973.
Homophila reports that CG7219 is a close match (7e-13) to human gene TBG (NP_000345), a gene associated with Thyroxine-binding globulin deficiency (3).
VDRC has 2 RNAi stocks for FBgn0031973 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 24 of 4 0.60Down
Head146 ± 44 of 4 3.80Up
Eye74 ± 34 of 4 1.94Up
Thoracicoabdominal ganglion20 ± 04 of 4 0.50Down
Salivary gland422 ± 244 of 411.03Up
Crop239 ± 134 of 4 6.30Up
Midgut1 ± 00 of 4 0.00Down
Tubule9 ± 11 of 4 0.30Down
Hindgut128 ± 74 of 4 3.40Up
Heart158 ± 404 of 4 4.14None
Fat body185 ± 504 of 4 4.84Up
Ovary5 ± 02 of 4 0.10Down
Testis10 ± 00 of 4 0.30Down
Male accessory glands12 ± 20 of 4 0.30Down
Virgin spermatheca148 ± 74 of 4 3.88Up
Mated spermatheca156 ± 104 of 4 4.08Up
Adult carcass193 ± 54 of 4 5.00Up
Larval CNS16 ± 24 of 4 0.42Down
Larval Salivary gland13 ± 31 of 4 0.35Down
Larval midgut1 ± 00 of 4 0.05Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut71 ± 94 of 4 1.87Up
Larval fat body196 ± 214 of 4 5.10Up
Larval trachea597 ± 1114 of 415.58Up
Larval carcass99 ± 104 of 4 2.59Up
S2 cells (growing)31 ± 34 of 4 0.83None
Whole fly38 ± 34 of 4

Looking for CG7219-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime