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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7225-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2R:15137265-15138419 (+) // 100.0 //):

Annotation Number : CG7225
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr2-86
Gbrowse :
Probeset : 1640386_at
Accessions : protein= , nucleotide=
Interpro : "0000042 // protein targeting to Golgi // inferred from genetic interaction /// 0000042 // protein targeting to Golgi //
FlyMine data for chr2-86.
BioGrid reports that CG7225 interacts with CG1505 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head32 24 of 4 0.30Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland1859 1524 of 417.54Up
Crop21 32 of 4 0.20Down
Midgut11 30 of 4 0.10Down
Tubule2 00 of 4 0.00Down
Hindgut2 10 of 4 0.00Down
Heart0 00 of 4 0.00Down
Fat body4 30 of 4 0.04Down
Ovary42 74 of 4 0.40Down
Testis38 14 of 4 0.40Down
Male accessory glands3192 2734 of 430.10Up
Virgin spermatheca234 244 of 4 2.21Up
Mated spermatheca241 194 of 4 2.28Up
Adult carcass27 42 of 4 0.30Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland178 44 of 4 1.68Up
Larval midgut2 00 of 4 0.03Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut57 104 of 4 0.54None
Larval fat body3 10 of 4 0.00Down
Larval trachea305 1604 of 4 2.88None
Larval carcass273 404 of 4 2.58Up
S2 cells (growing)1 00 of 4 0.02Down
Whole fly106 194 of 4

Looking for CG7225-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime