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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7234-RI through 18771 annotations produced 1 hits



glutamate receptor (GluRIIB):

Annotation Number : CG7234
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020429
Gbrowse : chr2L:5559341-5563502 (+) // 100.0 //
Probeset : 1625654_at
Accessions : protein= NP_523485;, nucleotide= NM_078761;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0020429.
Homophila reports that CG7234 is a close match (2e-75) to human gene GLUR3;GRIA3;MRX94 (NP_000819), a gene associated with Mental retardation, X-linked 94, 300699 (3).
TRiP has 1 RNAi stocks for FBgn0020429 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020429 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 10 of 4 1.40None
Head9 20 of 4 1.50None
Eye4 11 of 4 0.73None
Thoracicoabdominal ganglion6 20 of 4 1.00None
Salivary gland27 22 of 4 4.08Up
Crop17 54 of 4 2.60None
Midgut9 20 of 4 1.40None
Tubule21 23 of 4 3.20Up
Hindgut22 24 of 4 3.40Up
Heart16 24 of 4 2.40Up
Fat body22 64 of 4 3.29Up
Ovary5 01 of 4 0.80None
Testis6 21 of 4 1.00None
Male accessory glands17 32 of 4 2.60None
Virgin spermatheca23 14 of 4 3.53Up
Mated spermatheca29 93 of 4 4.30None
Adult carcass19 40 of 4 2.90None
Larval CNS12 04 of 4 1.80Up
Larval Salivary gland11 21 of 4 1.64None
Larval midgut14 30 of 4 2.13None
Larval tubule14 14 of 4 2.10Up
Larval hindgut25 34 of 4 3.77Up
Larval fat body17 20 of 4 2.50Up
Larval trachea6 31 of 4 1.03None
Larval carcass73 124 of 410.87Up
S2 cells (growing)7 01 of 4 1.11None
Whole fly6 10 of 4

Looking for CG7234-RI. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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