FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7241-RA through 18771 annotations produced 1 hits

Cyp304a1 (Cyp304a1):

Annotation Number : CG7241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038095
Gbrowse : chr3R:8789518-8791652 (+) // 100.0 //
Probeset : 1632451_at
Accessions : protein= NP_731751;, nucleotide= NM_169484;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0038095.
BDGP gene expression has embryonic in situ data for Cyp304a1: 11 pix of staining in 2 body parts.
Homophila reports that CG7241 is a close match (4e-12) to human gene CYP4F22;LI3 (NP_775754), a gene associated with Ichthyosis, lamellar, 3, 604777 (3).
VDRC has 2 RNAi stocks for FBgn0038095 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.10	Down
Head	7 ± 1	0 of 4	0.60	None
Eye	2 ± 1	0 of 4	0.24	Down
Thoracicoabdominal ganglion	3 ± 2	0 of 4	0.40	Down
Salivary gland	7 ± 4	0 of 4	0.71	None
Crop	5 ± 1	0 of 4	0.50	None
Midgut	3 ± 1	0 of 4	0.30	Down
Tubule	5 ± 0	0 of 4	0.50	Down
Hindgut	7 ± 0	0 of 4	0.60	None
Heart	12 ± 1	3 of 4	1.11	None
Fat body	61 ± 21	4 of 4	5.57	Up
Ovary	2 ± 1	0 of 4	0.20	Down
Testis	3 ± 1	1 of 4	0.30	Down
Male accessory glands	9 ± 0	0 of 4	0.80	None
Virgin spermatheca	38 ± 14	4 of 4	3.42	None
Mated spermatheca	102 ± 43	4 of 4	9.17	None
Adult carcass	21 ± 3	1 of 4	2.00	Up
Larval CNS	1 ± 0	0 of 4	0.12	Down
Larval Salivary gland	8 ± 2	1 of 4	0.72	None
Larval midgut	237 ± 56	4 of 4	21.38	Up
Larval tubule	1 ± 0	0 of 4	0.20	Down
Larval hindgut	8 ± 2	2 of 4	0.72	None
Larval fat body	559 ± 84	4 of 4	50.30	Up
Larval trachea	2 ± 1	0 of 4	0.24	Down
Larval carcass	3 ± 0	0 of 4	0.35	Down
S2 cells (growing)	4 ± 0	0 of 4	0.42	Down
Whole fly	11 ± 2	2 of 4

Looking for CG7241-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720