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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7260-RA through 18771 annotations produced 1 hits



Brachyenteron (byn):

Annotation Number : CG7260
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011723
Gbrowse : chr3L:11924480-11928831 (+) // 100.0 //
Probeset : 1639885_at
Accessions : protein= NP_524031;, nucleotide= NM_079307;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for FBgn0011723.
Homophila reports that CG7260 is a close match (2e-23) to human gene CPX;TBX22 (NP_001103349), a gene associated with Cleft palate with ankyloglossia, 303400 (3).
BioGrid reports that CG7260 interacts with CG10002 CG1389 .
VDRC has 2 RNAi stocks for FBgn0011723 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.30Down
Head4 10 of 4 0.30Down
Eye2 10 of 4 0.14Down
Thoracicoabdominal ganglion4 00 of 4 0.30Down
Salivary gland7 10 of 4 0.48Down
Crop6 20 of 4 0.40Down
Midgut7 10 of 4 0.50Down
Tubule11 10 of 4 0.80Down
Hindgut548 204 of 437.60Up
Heart3 20 of 4 0.21Down
Fat body7 40 of 4 0.48Down
Ovary3 00 of 4 0.20Down
Testis6 10 of 4 0.40Down
Male accessory glands14 31 of 4 1.00None
Virgin spermatheca11 11 of 4 0.76None
Mated spermatheca7 21 of 4 0.51Down
Adult carcass8 20 of 4 0.60None
Larval CNS4 10 of 4 0.29Down
Larval Salivary gland6 21 of 4 0.44None
Larval midgut6 20 of 4 0.41Down
Larval tubule9 20 of 4 0.70None
Larval hindgut351 44 of 424.08Up
Larval fat body21 30 of 4 1.40None
Larval trachea3 10 of 4 0.25Down
Larval carcass13 11 of 4 0.94None
S2 cells (growing)4 00 of 4 0.28Down
Whole fly14 04 of 4

Looking for CG7260-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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