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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7271-RA through 18771 annotations produced 1 hits



/// terminus (CG7271 /// term):

Annotation Number : CG7271
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003683 /// FBgn0036791
Gbrowse : chr3L:18581862-18583243 (+) // 100.0 // /// chr3L:18585423-18586865 (-) // 98.99 //
Probeset : 1638461_s_at
Accessions : protein= NP_524882; /// NP_649041;, nucleotide= NM_080143; /// NM_140784;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003677 // DNA binding // non-traceable author statement /// 0003677 // DNA binding // inferred from electronic annotati
FlyMine data for FBgn0003683 /// FBgn0036791.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 1.00None
Head3 ± 20 of 4 0.60None
Eye1 ± 00 of 4 0.22Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.30None
Salivary gland10 ± 10 of 4 1.75None
Crop7 ± 10 of 4 1.20None
Midgut1 ± 00 of 4 0.20Down
Tubule4 ± 00 of 4 0.80Down
Hindgut4 ± 10 of 4 0.70None
Heart6 ± 10 of 4 1.08None
Fat body6 ± 50 of 4 1.00None
Ovary1 ± 00 of 4 0.20None
Testis2 ± 10 of 4 0.50None
Male accessory glands5 ± 20 of 4 1.00None
Virgin spermatheca8 ± 10 of 4 1.35None
Mated spermatheca6 ± 20 of 4 1.07None
Adult carcass6 ± 20 of 4 1.00None
Larval CNS1 ± 00 of 4 0.18Down
Larval Salivary gland15 ± 10 of 4 2.61Up
Larval midgut2 ± 00 of 4 0.42None
Larval tubule1 ± 00 of 4 0.20None
Larval hindgut4 ± 20 of 4 0.70None
Larval fat body10 ± 30 of 4 1.70None
Larval trachea4 ± 30 of 4 0.68None
Larval carcass8 ± 20 of 4 1.33None
S2 cells (growing)4 ± 20 of 4 0.72None
Whole fly6 ± 10 of 4

Looking for CG7271-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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