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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7275-RA through 18771 annotations produced 1 hits


Annotation Number : CG7275
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036500
Gbrowse : chr3L:15492063-15493661 (+) // 100.0 //
Probeset : 1640460_at
Accessions : protein= NP_648767;, nucleotide= NM_140510;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0036500.
BDGP gene expression has embryonic in situ data for CG7275: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036500 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 34 of 4 0.70Down
Head93 54 of 4 0.80Down
Eye80 54 of 4 0.69Down
Thoracicoabdominal ganglion93 44 of 4 0.80Down
Salivary gland168 134 of 4 1.46Up
Crop136 34 of 4 1.20Up
Midgut113 114 of 4 1.00None
Tubule88 94 of 4 0.80Down
Hindgut105 54 of 4 0.90None
Heart95 74 of 4 0.83None
Fat body106 34 of 4 0.92None
Ovary173 14 of 4 1.50Up
Testis61 54 of 4 0.50Down
Male accessory glands255 54 of 4 2.20Up
Virgin spermatheca88 54 of 4 0.77Down
Mated spermatheca109 54 of 4 0.94None
Adult carcass118 64 of 4 1.00None
Larval CNS165 134 of 4 1.43Up
Larval Salivary gland126 44 of 4 1.09None
Larval midgut56 54 of 4 0.49Down
Larval tubule63 34 of 4 0.60Down
Larval hindgut81 34 of 4 0.70Down
Larval fat body105 44 of 4 0.90None
Larval trachea200 134 of 4 1.73Up
Larval carcass97 74 of 4 0.85None
S2 cells (growing)172 84 of 4 1.50Up
Whole fly115 54 of 4

Looking for CG7275-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime