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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7280-RA through 18771 annotations produced 1 hits



(CG7280):

Annotation Number : CG7280
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030966
Gbrowse : chrX:18740414-18742584 (-) // 100.0 //
Probeset : 1631309_at
Accessions : protein= NP_573331;, nucleotide= NM_133103;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // infe
Interpro : 0008482 // sulfite oxidase activity // inferred from sequence or structural similarity /// 0008482 // sulfite oxidase ac
FlyMine data for FBgn0030966.
BDGP gene expression has embryonic in situ data for CG7280: 9 pix of staining in 4 body parts.
Homophila reports that CG7280 is a close match (1e-125) to human gene SUOX (NP_001027559), a gene associated with Sulfite oxidase deficiency, 272300 (3).
VDRC has 3 RNAi stocks for FBgn0030966 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 ± 24 of 4 1.00None
Head69 ± 34 of 4 1.20None
Eye95 ± 54 of 4 1.64Up
Thoracicoabdominal ganglion73 ± 24 of 4 1.30None
Salivary gland36 ± 22 of 4 0.63Down
Crop55 ± 24 of 4 1.00None
Midgut37 ± 00 of 4 0.60Down
Tubule140 ± 154 of 4 2.40Up
Hindgut60 ± 24 of 4 1.00None
Heart50 ± 24 of 4 0.87None
Fat body86 ± 124 of 4 1.49Up
Ovary90 ± 24 of 4 1.60Up
Testis10 ± 22 of 4 0.20Down
Male accessory glands31 ± 12 of 4 0.50Down
Virgin spermatheca118 ± 14 of 4 2.05Up
Mated spermatheca86 ± 64 of 4 1.48Up
Adult carcass68 ± 24 of 4 1.20None
Larval CNS59 ± 24 of 4 1.02None
Larval Salivary gland43 ± 22 of 4 0.75None
Larval midgut71 ± 14 of 4 1.23None
Larval tubule145 ± 64 of 4 2.50Up
Larval hindgut255 ± 194 of 4 4.41Up
Larval fat body370 ± 434 of 4 6.40Up
Larval trachea80 ± 64 of 4 1.38Up
Larval carcass47 ± 62 of 4 0.81None
S2 cells (growing)46 ± 34 of 4 0.80None
Whole fly57 ± 64 of 4

Looking for CG7280-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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