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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7285-RA through 18771 annotations produced 1 hits



Drosophila allatostatin C receptor 1 (star1):

Annotation Number : CG7285
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036790
Gbrowse : chr3L:18566987-18568511 (+) // 100.0 //
Probeset : 1624962_at
Accessions : protein= NP_649040;, nucleotide= NM_140783;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0036790.
Homophila reports that CG7285 is a close match (8e-12) to human gene TRHR (NP_003292), a gene associated with Thyrotropin-releasing hormone resistance, generalized (3).
BioGrid reports that CG7285 interacts with CG7583 CG7656 CG8309 CG8542 CG9424 CG9498 CG9984 .
TRiP has 1 RNAi stocks for FBgn0036790 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036790 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 34 of 4 8.80Up
Head8 11 of 4 2.30None
Eye3 00 of 4 1.09None
Thoracicoabdominal ganglion12 12 of 4 3.50Up
Salivary gland6 20 of 4 1.80None
Crop12 00 of 4 3.60Up
Midgut21 21 of 4 6.20Up
Tubule8 02 of 4 2.40Up
Hindgut7 10 of 4 2.10None
Heart2 00 of 4 0.73None
Fat body7 21 of 4 2.26None
Ovary3 00 of 4 1.00None
Testis8 13 of 4 2.60None
Male accessory glands8 21 of 4 2.50None
Virgin spermatheca3 00 of 4 0.91None
Mated spermatheca3 10 of 4 0.97None
Adult carcass6 40 of 4 1.80None
Larval CNS4 13 of 4 1.29None
Larval Salivary gland16 13 of 4 4.73Up
Larval midgut11 10 of 4 3.42Up
Larval tubule7 11 of 4 2.00None
Larval hindgut7 21 of 4 2.09None
Larval fat body3 00 of 4 0.90None
Larval trachea4 20 of 4 1.35None
Larval carcass9 10 of 4 2.68None
S2 cells (growing)3 00 of 4 1.14None
Whole fly3 20 of 4

Looking for CG7285-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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