FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7287-RA through 18771 annotations produced 2 hits

Lcp65Aa (Lcp65Aa):

Annotation Number : CG7287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020645 /// FBgn0020646
Gbrowse : chr3L:6144432-6144741 (+) // 100.0 //
Probeset : 1629340_s_at
Accessions : protein= NP_477280;, nucleotide= NM_057932;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0020645 /// FBgn0020646.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.30	None
Head	5 ± 2	0 of 4	1.90	None
Eye	1 ± 0	0 of 4	0.59	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	1.10	None
Salivary gland	10 ± 2	0 of 4	3.91	Up
Crop	4 ± 1	0 of 4	1.70	None
Midgut	1 ± 0	0 of 4	0.60	None
Tubule	4 ± 0	0 of 4	1.50	None
Hindgut	2 ± 0	0 of 4	0.80	None
Heart	0 ± 0	0 of 4	0.30	None
Fat body	2 ± 0	0 of 4	0.76	None
Ovary	4 ± 0	0 of 4	1.70	None
Testis	3 ± 1	0 of 4	1.10	None
Male accessory glands	5 ± 0	0 of 4	2.10	Up
Virgin spermatheca	0 ± 0	0 of 4	0.21	Down
Mated spermatheca	1 ± 0	0 of 4	0.53	None
Adult carcass	1 ± 0	0 of 4	0.60	None
Larval CNS	2 ± 1	0 of 4	0.87	None
Larval Salivary gland	1 ± 0	0 of 4	0.41	None
Larval midgut	1 ± 0	0 of 4	0.49	None
Larval tubule	6 ± 2	1 of 4	2.40	None
Larval hindgut	810 ± 113	4 of 4	291.93	Up
Larval fat body	5 ± 1	0 of 4	2.00	None
Larval trachea	18 ± 8	1 of 4	6.59	Up
Larval carcass	939 ± 193	4 of 4	338.41	Up
S2 cells (growing)	6 ± 1	0 of 4	2.40	Up
Whole fly	2 ± 0	0 of 4

Lcp65Aa (Lcp65Aa):

Annotation Number : CG7287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020645
Gbrowse : chr3L:6144432-6144741 (+) // 100.0 //
Probeset : 1625866_at
Accessions : protein= NP_477280;, nucleotide= NM_057932;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0020645.
VDRC has 3 RNAi stocks for FBgn0020645 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	0.90	None
Head	6 ± 2	0 of 4	1.30	None
Eye	3 ± 1	0 of 4	0.62	None
Thoracicoabdominal ganglion	8 ± 3	0 of 4	1.70	None
Salivary gland	32 ± 2	0 of 4	6.17	Up
Crop	13 ± 3	0 of 4	2.60	None
Midgut	11 ± 1	0 of 4	2.10	Up
Tubule	15 ± 2	0 of 4	3.00	Up
Hindgut	7 ± 0	0 of 4	1.40	None
Heart	4 ± 1	0 of 4	0.94	None
Fat body	38 ± 19	0 of 4	7.48	Up
Ovary	7 ± 2	0 of 4	1.40	None
Testis	41 ± 4	0 of 4	8.00	Up
Male accessory glands	6 ± 0	0 of 4	1.20	None
Virgin spermatheca	20 ± 1	0 of 4	4.01	Up
Mated spermatheca	16 ± 3	0 of 4	3.25	Up
Adult carcass	6 ± 1	0 of 4	1.30	None
Larval CNS	3 ± 1	0 of 4	0.76	None
Larval Salivary gland	5 ± 1	0 of 4	1.12	None
Larval midgut	20 ± 2	0 of 4	3.94	Up
Larval tubule	15 ± 3	0 of 4	3.10	Up
Larval hindgut	647 ± 78	4 of 4	124.53	Up
Larval fat body	7 ± 2	0 of 4	1.50	None
Larval trachea	33 ± 5	0 of 4	6.39	Up
Larval carcass	986 ± 191	4 of 4	189.70	Up
S2 cells (growing)	27 ± 4	0 of 4	5.36	Up
Whole fly	5 ± 0	0 of 4

Looking for CG7287-RA. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720