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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7288-RA through 18771 annotations produced 1 hits



(CG7288):

Annotation Number : CG7288
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030969
Gbrowse : chrX:18752248-18754111 (+) // 100.0 //
Probeset : 1636587_at
Accessions : protein= NP_573334;, nucleotide= NM_133106;
Pathway : via spliceosome // inferred by curator /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from el
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay
FlyMine data for FBgn0030969.
BDGP gene expression has embryonic in situ data for CG7288: 13 pix of staining in 3 body parts.
VDRC has 3 RNAi stocks for FBgn0030969 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 ± 44 of 4 0.70Down
Head46 ± 24 of 4 0.40Down
Eye51 ± 34 of 4 0.43Down
Thoracicoabdominal ganglion77 ± 24 of 4 0.60Down
Salivary gland53 ± 24 of 4 0.44Down
Crop55 ± 34 of 4 0.50Down
Midgut91 ± 24 of 4 0.80Down
Tubule44 ± 14 of 4 0.40Down
Hindgut45 ± 24 of 4 0.40Down
Heart34 ± 14 of 4 0.29Down
Fat body50 ± 134 of 4 0.42Down
Ovary271 ± 14 of 4 2.20Up
Testis64 ± 14 of 4 0.50Down
Male accessory glands51 ± 34 of 4 0.40Down
Virgin spermatheca43 ± 14 of 4 0.36Down
Mated spermatheca48 ± 24 of 4 0.40Down
Adult carcass39 ± 24 of 4 0.30Down
Larval CNS315 ± 264 of 4 2.61Up
Larval Salivary gland105 ± 34 of 4 0.87None
Larval midgut78 ± 34 of 4 0.65Down
Larval tubule63 ± 24 of 4 0.50Down
Larval hindgut87 ± 24 of 4 0.73Down
Larval fat body56 ± 34 of 4 0.50Down
Larval trachea117 ± 74 of 4 0.97None
Larval carcass85 ± 34 of 4 0.71Down
S2 cells (growing)191 ± 54 of 4 1.58Up
Whole fly121 ± 64 of 4

Looking for CG7288-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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