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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7289-RA through 18771 annotations produced 1 hits



(CG7289):

Annotation Number : CG7289
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031379
Gbrowse : chr2L:1982233-1984512 (+) // 100.0 //
Probeset : 1641097_at
Accessions : protein= NP_608635;, nucleotide= NM_134791;
FlyMine data for FBgn0031379.
VDRC has 1 RNAi stocks for FBgn0031379 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain219 ± 74 of 4 1.80Up
Head150 ± 74 of 4 1.20None
Eye183 ± 64 of 4 1.47Up
Thoracicoabdominal ganglion217 ± 74 of 4 1.70Up
Salivary gland418 ± 134 of 4 3.35Up
Crop148 ± 54 of 4 1.20None
Midgut140 ± 34 of 4 1.10None
Tubule109 ± 14 of 4 0.90Down
Hindgut133 ± 64 of 4 1.10None
Heart130 ± 24 of 4 1.04None
Fat body71 ± 64 of 4 0.57Down
Ovary177 ± 44 of 4 1.40Up
Testis309 ± 74 of 4 2.50Up
Male accessory glands445 ± 84 of 4 3.60Up
Virgin spermatheca129 ± 74 of 4 1.03None
Mated spermatheca131 ± 14 of 4 1.05None
Adult carcass92 ± 74 of 4 0.70Down
Larval CNS156 ± 74 of 4 1.25Up
Larval Salivary gland257 ± 104 of 4 2.06Up
Larval midgut146 ± 64 of 4 1.17None
Larval tubule132 ± 64 of 4 1.10None
Larval hindgut140 ± 64 of 4 1.12None
Larval fat body113 ± 94 of 4 0.90None
Larval trachea152 ± 74 of 4 1.22Up
Larval carcass107 ± 44 of 4 0.86None
S2 cells (growing)199 ± 64 of 4 1.60Up
Whole fly124 ± 84 of 4

Looking for CG7289-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime