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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7291-RA through 18771 annotations produced 1 hits



Epididymal secretory protein (Npc2a):

Annotation Number : CG7291
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031381
Gbrowse : chr2L:1988290-1988949 (+) // 100.0 //
Probeset : 1625334_at
Accessions : protein= NP_608637;, nucleotide= NM_134793;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031381.
Homophila reports that CG7291 is a close match (9e-24) to human gene HE1;NPC2 (NP_006423), a gene associated with Niemann-pick disease, type C2, 607625 (3).
TRiP has 1 RNAi stocks for FBgn0031381 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1200 ± 374 of 4 2.20Up
Head1509 ± 824 of 4 2.70Up
Eye4676 ± 1294 of 4 8.44Up
Thoracicoabdominal ganglion1747 ± 464 of 4 3.20Up
Salivary gland2841 ± 1184 of 4 5.13Up
Crop399 ± 164 of 4 0.70Down
Midgut594 ± 414 of 4 1.10None
Tubule175 ± 154 of 4 0.30Down
Hindgut914 ± 244 of 4 1.70Up
Heart1798 ± 1174 of 4 3.25Up
Fat body185 ± 214 of 4 0.34Down
Ovary733 ± 34 of 4 1.30Up
Testis284 ± 134 of 4 0.50Down
Male accessory glands1581 ± 614 of 4 2.90Up
Virgin spermatheca328 ± 124 of 4 0.59Down
Mated spermatheca219 ± 144 of 4 0.40Down
Adult carcass312 ± 204 of 4 0.60Down
Larval CNS975 ± 474 of 4 1.76Up
Larval Salivary gland1034 ± 1264 of 4 1.87Up
Larval midgut946 ± 814 of 4 1.71Up
Larval tubule847 ± 284 of 4 1.50Up
Larval hindgut199 ± 284 of 4 0.36Down
Larval fat body2356 ± 2964 of 4 4.30Up
Larval trachea270 ± 1304 of 4 0.49Down
Larval carcass161 ± 64 of 4 0.29Down
S2 cells (growing)502 ± 84 of 4 0.91None
Whole fly554 ± 254 of 4

Looking for CG7291-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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