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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7292-RA through 18771 annotations produced 1 hits



Rrp6 (Rrp6):

Annotation Number : CG7292
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038269
Gbrowse : chr3R:10708582-10711918 (-) // 100.0 //
Probeset : 1636464_at
Accessions : protein= NP_001097795;, nucleotide= NM_001104325;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006378 // mRNA polyadenylatio
FlyMine data for FBgn0038269.
BDGP gene expression has embryonic in situ data for CG7292: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0038269 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038269 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 ± 34 of 4 0.70Down
Head58 ± 14 of 4 0.50Down
Eye57 ± 34 of 4 0.53Down
Thoracicoabdominal ganglion62 ± 44 of 4 0.60Down
Salivary gland78 ± 64 of 4 0.73Down
Crop64 ± 44 of 4 0.60Down
Midgut48 ± 34 of 4 0.40Down
Tubule30 ± 23 of 4 0.30Down
Hindgut55 ± 14 of 4 0.50Down
Heart47 ± 04 of 4 0.44Down
Fat body63 ± 44 of 4 0.59Down
Ovary247 ± 54 of 4 2.30Up
Testis243 ± 114 of 4 2.20Up
Male accessory glands152 ± 44 of 4 1.40Up
Virgin spermatheca42 ± 24 of 4 0.39Down
Mated spermatheca46 ± 24 of 4 0.43Down
Adult carcass62 ± 54 of 4 0.60Down
Larval CNS110 ± 64 of 4 1.01None
Larval Salivary gland92 ± 64 of 4 0.85None
Larval midgut38 ± 24 of 4 0.35Down
Larval tubule44 ± 04 of 4 0.40Down
Larval hindgut63 ± 34 of 4 0.59Down
Larval fat body63 ± 164 of 4 0.60None
Larval trachea89 ± 34 of 4 0.83None
Larval carcass61 ± 74 of 4 0.57Down
S2 cells (growing)92 ± 14 of 4 0.85None
Whole fly108 ± 84 of 4

Looking for CG7292-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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