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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7293-RA through 18771 annotations produced 1 hits



kinesin II (Klp68D):

Annotation Number : CG7293
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004381
Gbrowse : chr3L:11788709-11791975 (+) // 99.83 //
Probeset : 1639576_at
Accessions : protein= NP_524029;, nucleotide= NM_079305;
Pathway : 0005871 // kinesin complex // inferred from sequence or structural similarity /// 0005873 // plus-end kinesin complex //
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from dire
FlyMine data for FBgn0004381.
BDGP gene expression has embryonic in situ data for Klp68D: 20 pix of staining in 8 body parts.
Homophila reports that CG7293 is a close match (1e-53) to human gene CFEOM1;FEOM1;KIAA1708;KIF21A (NP_060111), a gene associated with Fibrosis of extraocular muscles, congenital, 1, 135700 (3).
BioGrid reports that CG7293 interacts with CG7987 .
TRiP has 1 RNAi stocks for FBgn0004381 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain471 ± 44 of 4 3.50Up
Head204 ± 104 of 4 1.50Up
Eye146 ± 24 of 4 1.07None
Thoracicoabdominal ganglion472 ± 54 of 4 3.50Up
Salivary gland177 ± 74 of 4 1.30Up
Crop100 ± 64 of 4 0.70Down
Midgut65 ± 24 of 4 0.50Down
Tubule46 ± 44 of 4 0.30Down
Hindgut78 ± 44 of 4 0.60Down
Heart41 ± 14 of 4 0.30Down
Fat body73 ± 134 of 4 0.54Down
Ovary285 ± 74 of 4 2.10Up
Testis40 ± 24 of 4 0.30Down
Male accessory glands67 ± 24 of 4 0.50Down
Virgin spermatheca64 ± 44 of 4 0.48Down
Mated spermatheca77 ± 44 of 4 0.57Down
Adult carcass69 ± 54 of 4 0.50Down
Larval CNS319 ± 394 of 4 2.34Up
Larval Salivary gland355 ± 344 of 4 2.60Up
Larval midgut76 ± 74 of 4 0.56Down
Larval tubule96 ± 74 of 4 0.70Down
Larval hindgut176 ± 64 of 4 1.29Up
Larval fat body60 ± 54 of 4 0.40Down
Larval trachea53 ± 94 of 4 0.39Down
Larval carcass140 ± 54 of 4 1.03None
S2 cells (growing)143 ± 54 of 4 1.05None
Whole fly136 ± 44 of 4

Looking for CG7293-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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