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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7294-RA through 18771 annotations produced 1 hits



(CG7294):

Annotation Number : CG7294
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032284
Gbrowse : chr2L:10688731-10689269 (-) // 99.08 //
Probeset : 1631635_at
Accessions : protein= NP_609438;, nucleotide= NM_135594;
FlyMine data for FBgn0032284.
VDRC has 3 RNAi stocks for FBgn0032284 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20None
Head18 33 of 4 2.50None
Eye6 10 of 4 0.95None
Thoracicoabdominal ganglion1 00 of 4 0.20None
Salivary gland10 50 of 4 1.44None
Crop6 10 of 4 0.90None
Midgut5 10 of 4 0.80None
Tubule4 00 of 4 0.60Down
Hindgut19 33 of 4 2.70Up
Heart3 10 of 4 0.48None
Fat body4 30 of 4 0.58None
Ovary1 00 of 4 0.10None
Testis0 00 of 4 0.10None
Male accessory glands8 10 of 4 1.20None
Virgin spermatheca10 11 of 4 1.41None
Mated spermatheca8 31 of 4 1.19None
Adult carcass7 30 of 4 1.10None
Larval CNS4 32 of 4 0.59None
Larval Salivary gland10 20 of 4 1.48None
Larval midgut27 44 of 4 3.79Up
Larval tubule6 20 of 4 0.90None
Larval hindgut507 1484 of 470.51Up
Larval fat body12 32 of 4 1.70None
Larval trachea468 694 of 465.00Up
Larval carcass1536 1054 of 4213.42Up
S2 cells (growing)0 00 of 4 0.11None
Whole fly7 31 of 4

Looking for CG7294-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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