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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7298-RA through 18771 annotations produced 1 hits



(CG7298):

Annotation Number : CG7298
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036948
Gbrowse : chr3L:20195164-20196786 (-) // 100.0 //
Probeset : 1628405_at
Accessions : protein= NP_649187;, nucleotide= NM_140930;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0036948.
BDGP gene expression has embryonic in situ data for CG7298: 9 pix of staining in 2 body parts.
VDRC has 4 RNAi stocks for FBgn0036948 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye5 41 of 4 0.02Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland8 20 of 4 0.04Down
Crop3 10 of 4 0.00Down
Midgut2860 1524 of 412.00Up
Tubule14 71 of 4 0.10Down
Hindgut193 134 of 4 0.80None
Heart0 00 of 4 0.00Down
Fat body2 10 of 4 0.01Down
Ovary2 00 of 4 0.00Down
Testis20 24 of 4 0.10Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca2 10 of 4 0.01Down
Mated spermatheca2 00 of 4 0.01Down
Adult carcass7 30 of 4 0.00Down
Larval CNS2 30 of 4 0.01Down
Larval Salivary gland3 00 of 4 0.01Down
Larval midgut5334 1504 of 422.44Up
Larval tubule180 1234 of 4 0.80None
Larval hindgut3090 1034 of 413.00Up
Larval fat body7 20 of 4 0.00Down
Larval trachea2 10 of 4 0.01Down
Larval carcass9 61 of 4 0.04Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly237 624 of 4

Looking for CG7298-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime