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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7333-RA through 18771 annotations produced 1 hits



(CG7333):

Annotation Number : CG7333
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038715
Gbrowse : chr3R:15426374-15428318 (+) // 100.0 //
Probeset : 1634138_at
Accessions : protein= NP_650814;, nucleotide= NM_142557;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0038715.
Homophila reports that CG7333 is a close match (4e-11) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 2 RNAi stocks for FBgn0038715 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.40Down
Head2 ± 10 of 4 0.40None
Eye1 ± 00 of 4 0.25Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.60None
Salivary gland11 ± 41 of 4 2.05None
Crop1 ± 10 of 4 0.30Down
Midgut2 ± 10 of 4 0.40None
Tubule3 ± 00 of 4 0.60Down
Hindgut1 ± 00 of 4 0.20Down
Heart1 ± 00 of 4 0.21Down
Fat body1 ± 00 of 4 0.23Down
Ovary0 ± 00 of 4 0.10Down
Testis67 ± 74 of 411.60Up
Male accessory glands3 ± 10 of 4 0.60None
Virgin spermatheca4 ± 20 of 4 0.79None
Mated spermatheca3 ± 10 of 4 0.52None
Adult carcass1 ± 00 of 4 0.20Down
Larval CNS0 ± 00 of 4 0.13Down
Larval Salivary gland5 ± 10 of 4 0.96None
Larval midgut0 ± 00 of 4 0.15Down
Larval tubule3 ± 10 of 4 0.60None
Larval hindgut0 ± 00 of 4 0.14Down
Larval fat body3 ± 10 of 4 0.70None
Larval trachea2 ± 10 of 4 0.39Down
Larval carcass2 ± 00 of 4 0.40Down
S2 cells (growing)0 ± 00 of 4 0.15Down
Whole fly5 ± 10 of 4

Looking for CG7333-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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