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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7352-RA through 18771 annotations produced 1 hits



(CG7352):

Annotation Number : CG7352
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037581
Gbrowse : chr3R:4173485-4175018 (+) // 100.0 //
Probeset : 1632855_at
Accessions : protein= NP_001163550; /// NP_649795;, nucleotide= NM_001170079; /// NM_141538;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037581.
BioGrid reports that CG7352 interacts with CG9124 CG8580 CG9418 CG9712 .
VDRC has 2 RNAi stocks for FBgn0037581 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 24 of 4 0.70Down
Head6 ± 21 of 4 0.40Down
Eye5 ± 01 of 4 0.29Down
Thoracicoabdominal ganglion13 ± 14 of 4 0.70None
Salivary gland2 ± 00 of 4 0.13Down
Crop2 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.16Down
Fat body1 ± 00 of 4 0.10Down
Ovary19 ± 24 of 4 1.00None
Testis210 ± 144 of 411.20Up
Male accessory glands3 ± 00 of 4 0.20Down
Virgin spermatheca1 ± 00 of 4 0.06Down
Mated spermatheca2 ± 00 of 4 0.12Down
Adult carcass3 ± 10 of 4 0.20Down
Larval CNS50 ± 44 of 4 2.70Up
Larval Salivary gland3 ± 10 of 4 0.17Down
Larval midgut7 ± 10 of 4 0.37Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.11Down
Larval fat body21 ± 101 of 4 1.10None
Larval trachea4 ± 10 of 4 0.23Down
Larval carcass7 ± 11 of 4 0.41Down
S2 cells (growing)9 ± 13 of 4 0.48Down
Whole fly18 ± 24 of 4

Looking for CG7352-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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