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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7354-RA through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S26 (mRpS26):

Annotation Number : CG7354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036774
Gbrowse : chr3L:18099680-18100602 (+) // 100.0 //
Probeset : 1641579_at
Accessions : protein= NP_524134;, nucleotide= NM_079410;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0036774.
BDGP gene expression has embryonic in situ data for mRpS26: 13 pix of staining in 17 body parts.
VDRC has 2 RNAi stocks for FBgn0036774 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain224 54 of 4 1.30Up
Head120 44 of 4 0.70Down
Eye81 54 of 4 0.47Down
Thoracicoabdominal ganglion175 54 of 4 1.00None
Salivary gland106 54 of 4 0.61Down
Crop162 74 of 4 0.90None
Midgut129 24 of 4 0.70Down
Tubule160 54 of 4 0.90Down
Hindgut211 44 of 4 1.20Up
Heart169 54 of 4 0.98None
Fat body126 114 of 4 0.73Down
Ovary283 64 of 4 1.60Up
Testis100 34 of 4 0.60Down
Male accessory glands118 94 of 4 0.70Down
Virgin spermatheca98 64 of 4 0.57Down
Mated spermatheca90 54 of 4 0.52Down
Adult carcass107 74 of 4 0.60Down
Larval CNS167 234 of 4 0.97None
Larval Salivary gland137 24 of 4 0.79Down
Larval midgut90 74 of 4 0.52Down
Larval tubule74 64 of 4 0.40Down
Larval hindgut161 134 of 4 0.93None
Larval fat body66 24 of 4 0.40Down
Larval trachea229 254 of 4 1.32Up
Larval carcass116 184 of 4 0.67Down
S2 cells (growing)142 44 of 4 0.82Down
Whole fly173 44 of 4

Looking for CG7354-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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