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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7356-RA through 18771 annotations produced 1 hits

Transglutaminase (Tg):

Annotation Number : CG7356
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031975
Gbrowse : chr2L:8011406-8026901 (+) // 100.0 //
Probeset : 1624371_a_at
Accessions : protein= NP_609174; /// NP_723332;, nucleotide= NM_135330; /// NM_164778;
Interpro : 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from sequence or structural similarity /// 0
FlyMine data for FBgn0031975.
BDGP gene expression has embryonic in situ data for CG7356: 37 pix of staining in 14 body parts.
Homophila reports that CG7356 is a close match (1e-56) to human gene EPB42 (NP_000110), a gene associated with Spherocytosis, hereditary, Japanese type (3).
BioGrid reports that CG7356 interacts with CG8598 .
VDRC has 3 RNAi stocks for FBgn0031975 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 12 of 4 0.50Down
Head94 54 of 4 1.90Up
Eye50 14 of 4 1.02None
Thoracicoabdominal ganglion49 14 of 4 1.00None
Salivary gland18 20 of 4 0.38Down
Crop1118 94 of 422.80Up
Midgut18 14 of 4 0.40Down
Tubule20 23 of 4 0.40Down
Hindgut365 134 of 4 7.40Up
Heart87 144 of 4 1.79None
Fat body22 93 of 4 0.46Down
Ovary29 24 of 4 0.60Down
Testis6 01 of 4 0.10Down
Male accessory glands26 24 of 4 0.50Down
Virgin spermatheca14 23 of 4 0.29Down
Mated spermatheca17 22 of 4 0.35Down
Adult carcass110 104 of 4 2.30Up
Larval CNS39 184 of 4 0.80None
Larval Salivary gland357 164 of 4 7.29Up
Larval midgut7 20 of 4 0.15Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut105 164 of 4 2.14Up
Larval fat body1 00 of 4 0.00Down
Larval trachea84 414 of 4 1.72None
Larval carcass120 64 of 4 2.45Up
S2 cells (growing)1 00 of 4 0.02Down
Whole fly49 44 of 4

Looking for CG7356-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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