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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7358-RA through 18771 annotations produced 1 hits



(CG7358):

Annotation Number : CG7358
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030974
Gbrowse : chrX:18783042-18787666 (-) // 100.0 //
Probeset : 1630000_at
Accessions : protein= NP_573339;, nucleotide= NM_133111;
FlyMine data for FBgn0030974.
BDGP gene expression has embryonic in situ data for CG7358: 16 pix of staining in 15 body parts.
VDRC has 3 RNAi stocks for FBgn0030974 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain255 54 of 4 3.10Up
Head104 34 of 4 1.20Up
Eye140 104 of 4 1.68Up
Thoracicoabdominal ganglion206 44 of 4 2.50Up
Salivary gland298 104 of 4 3.58Up
Crop102 44 of 4 1.20Up
Midgut81 24 of 4 1.00None
Tubule104 34 of 4 1.30Up
Hindgut86 14 of 4 1.00None
Heart75 44 of 4 0.91None
Fat body62 64 of 4 0.75Down
Ovary107 24 of 4 1.30Up
Testis43 04 of 4 0.50Down
Male accessory glands142 74 of 4 1.70Up
Virgin spermatheca89 04 of 4 1.07None
Mated spermatheca108 94 of 4 1.30None
Adult carcass101 44 of 4 1.20Up
Larval CNS165 84 of 4 1.99Up
Larval Salivary gland229 114 of 4 2.75Up
Larval midgut102 54 of 4 1.22Up
Larval tubule109 44 of 4 1.30Up
Larval hindgut97 14 of 4 1.17Up
Larval fat body65 44 of 4 0.80Down
Larval trachea121 114 of 4 1.45Up
Larval carcass93 44 of 4 1.12None
S2 cells (growing)146 44 of 4 1.76Up
Whole fly83 44 of 4

Looking for CG7358-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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