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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7364-RA through 18771 annotations produced 2 hits



CG7364 (TM9SF4):

Annotation Number : CG7364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028541
Gbrowse : chr2L:13771086-13774310 (+) // 100.0 //
Probeset : 1628509_at
Accessions : protein= NP_609669;, nucleotide= NM_135825;
Pathway : engulfment // inferred from mutant phenotype /// 0035010 // encapsulation of foreign target // inferred from mutant phe
Interpro : 0005768 // endosome // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred f
FlyMine data for FBgn0028541.
VDRC has 2 RNAi stocks for FBgn0028541 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain472 154 of 4 1.60Up
Head409 114 of 4 1.40Up
Eye632 164 of 4 2.18Up
Thoracicoabdominal ganglion578 134 of 4 2.00Up
Salivary gland1638 454 of 4 5.65Up
Crop348 144 of 4 1.20None
Midgut318 44 of 4 1.10None
Tubule590 234 of 4 2.00Up
Hindgut323 34 of 4 1.10None
Heart407 224 of 4 1.41Up
Fat body464 274 of 4 1.60Up
Ovary423 124 of 4 1.50Up
Testis307 54 of 4 1.10None
Male accessory glands1227 454 of 4 4.20Up
Virgin spermatheca657 194 of 4 2.27Up
Mated spermatheca724 204 of 4 2.50Up
Adult carcass316 114 of 4 1.10None
Larval CNS539 74 of 4 1.86Up
Larval Salivary gland1829 944 of 4 6.31Up
Larval midgut383 124 of 4 1.32Up
Larval tubule427 84 of 4 1.50Up
Larval hindgut431 74 of 4 1.49Up
Larval fat body469 184 of 4 1.60Up
Larval trachea439 204 of 4 1.52Up
Larval carcass373 144 of 4 1.29Up
S2 cells (growing)824 24 of 4 2.84Up
Whole fly290 204 of 4



CG7364 (TM9SF4):

Annotation Number : CT35261
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028541
Gbrowse : chr2L:13773881-13774310 (+) // 100.0 //
Probeset : 1628741_s_at
Accessions : protein= NP_609669;, nucleotide= NM_135825;
Pathway : engulfment // inferred from mutant phenotype /// 0035010 // encapsulation of foreign target // inferred from mutant phe
Interpro : 0005768 // endosome // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred f
FlyMine data for FBgn0028541.
VDRC has 2 RNAi stocks for FBgn0028541 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head0 00 of 4 0.10Down
Eye0 00 of 4 0.07Down
Thoracicoabdominal ganglion1 10 of 4 0.20Down
Salivary gland3 10 of 4 0.42Down
Crop2 10 of 4 0.30Down
Midgut1 00 of 4 0.20Down
Tubule2 00 of 4 0.20Down
Hindgut0 00 of 4 0.10Down
Heart0 00 of 4 0.04Down
Fat body1 00 of 4 0.14Down
Ovary0 00 of 4 0.00Down
Testis123 94 of 413.80Up
Male accessory glands4 10 of 4 0.50Down
Virgin spermatheca1 00 of 4 0.11Down
Mated spermatheca0 00 of 4 0.08Down
Adult carcass5 30 of 4 0.70None
Larval CNS0 00 of 4 0.08Down
Larval Salivary gland1 00 of 4 0.17Down
Larval midgut0 00 of 4 0.06Down
Larval tubule2 10 of 4 0.30Down
Larval hindgut0 00 of 4 0.09Down
Larval fat body3 10 of 4 0.40Down
Larval trachea0 00 of 4 0.05Down
Larval carcass6 11 of 4 0.78None
S2 cells (growing)1 00 of 4 0.21Down
Whole fly8 10 of 4

Looking for CG7364-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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