FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7364-RA through 18771 annotations produced 2 hits

CG7364 (TM9SF4):

Annotation Number : CT35261
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028541
Gbrowse : chr2L:13773881-13774310 (+) // 100.0 //
Probeset : 1628741_s_at
Accessions : protein= NP_609669;, nucleotide= NM_135825;
Pathway : engulfment // inferred from mutant phenotype /// 0035010 // encapsulation of foreign target // inferred from mutant phe
Interpro : 0005768 // endosome // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred f
FlyMine data for FBgn0028541.
VDRC has 2 RNAi stocks for FBgn0028541 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.10	Down
Head	0 ± 0	0 of 4	0.10	Down
Eye	0 ± 0	0 of 4	0.07	Down
Thoracicoabdominal ganglion	1 ± 1	0 of 4	0.20	Down
Salivary gland	3 ± 1	0 of 4	0.42	Down
Crop	2 ± 1	0 of 4	0.30	Down
Midgut	1 ± 0	0 of 4	0.20	Down
Tubule	2 ± 0	0 of 4	0.20	Down
Hindgut	0 ± 0	0 of 4	0.10	Down
Heart	0 ± 0	0 of 4	0.04	Down
Fat body	1 ± 0	0 of 4	0.14	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	123 ± 9	4 of 4	13.80	Up
Male accessory glands	4 ± 1	0 of 4	0.50	Down
Virgin spermatheca	1 ± 0	0 of 4	0.11	Down
Mated spermatheca	0 ± 0	0 of 4	0.08	Down
Adult carcass	5 ± 3	0 of 4	0.70	None
Larval CNS	0 ± 0	0 of 4	0.08	Down
Larval Salivary gland	1 ± 0	0 of 4	0.17	Down
Larval midgut	0 ± 0	0 of 4	0.06	Down
Larval tubule	2 ± 1	0 of 4	0.30	Down
Larval hindgut	0 ± 0	0 of 4	0.09	Down
Larval fat body	3 ± 1	0 of 4	0.40	Down
Larval trachea	0 ± 0	0 of 4	0.05	Down
Larval carcass	6 ± 1	1 of 4	0.78	None
S2 cells (growing)	1 ± 0	0 of 4	0.21	Down
Whole fly	8 ± 1	0 of 4

CG7364 (TM9SF4):

Annotation Number : CG7364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028541
Gbrowse : chr2L:13771086-13774310 (+) // 100.0 //
Probeset : 1628509_at
Accessions : protein= NP_609669;, nucleotide= NM_135825;
Pathway : engulfment // inferred from mutant phenotype /// 0035010 // encapsulation of foreign target // inferred from mutant phe
Interpro : 0005768 // endosome // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred f
FlyMine data for FBgn0028541.
VDRC has 2 RNAi stocks for FBgn0028541 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	472 ± 15	4 of 4	1.60	Up
Head	409 ± 11	4 of 4	1.40	Up
Eye	632 ± 16	4 of 4	2.18	Up
Thoracicoabdominal ganglion	578 ± 13	4 of 4	2.00	Up
Salivary gland	1638 ± 45	4 of 4	5.65	Up
Crop	348 ± 14	4 of 4	1.20	None
Midgut	318 ± 4	4 of 4	1.10	None
Tubule	590 ± 23	4 of 4	2.00	Up
Hindgut	323 ± 3	4 of 4	1.10	None
Heart	407 ± 22	4 of 4	1.41	Up
Fat body	464 ± 27	4 of 4	1.60	Up
Ovary	423 ± 12	4 of 4	1.50	Up
Testis	307 ± 5	4 of 4	1.10	None
Male accessory glands	1227 ± 45	4 of 4	4.20	Up
Virgin spermatheca	657 ± 19	4 of 4	2.27	Up
Mated spermatheca	724 ± 20	4 of 4	2.50	Up
Adult carcass	316 ± 11	4 of 4	1.10	None
Larval CNS	539 ± 7	4 of 4	1.86	Up
Larval Salivary gland	1829 ± 94	4 of 4	6.31	Up
Larval midgut	383 ± 12	4 of 4	1.32	Up
Larval tubule	427 ± 8	4 of 4	1.50	Up
Larval hindgut	431 ± 7	4 of 4	1.49	Up
Larval fat body	469 ± 18	4 of 4	1.60	Up
Larval trachea	439 ± 20	4 of 4	1.52	Up
Larval carcass	373 ± 14	4 of 4	1.29	Up
S2 cells (growing)	824 ± 2	4 of 4	2.84	Up
Whole fly	290 ± 20	4 of 4

Looking for CG7364-RA. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720