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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7375-RA through 18771 annotations produced 1 hits



(CG7375):

Annotation Number : CG7375
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035853
Gbrowse : chr3L:8189632-8190956 (-) // 100.0 //
Probeset : 1630816_at
Accessions : protein= NP_648187;, nucleotide= NM_139930;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity //
FlyMine data for FBgn0035853.
BDGP gene expression has embryonic in situ data for CG7375: 11 pix of staining in 2 body parts.
Homophila reports that CG7375 is a close match (8e-11) to human gene RAD6A;UBE2A (NP_861427), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG7375 interacts with CG8667 CG9893 .
VDRC has 3 RNAi stocks for FBgn0035853 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain224 ± 94 of 4 0.50Down
Head286 ± 144 of 4 0.70Down
Eye329 ± 74 of 4 0.78Down
Thoracicoabdominal ganglion200 ± 44 of 4 0.50Down
Salivary gland499 ± 224 of 4 1.18None
Crop391 ± 64 of 4 0.90None
Midgut563 ± 244 of 4 1.30Up
Tubule369 ± 134 of 4 0.90Down
Hindgut383 ± 74 of 4 0.90None
Heart380 ± 74 of 4 0.90None
Fat body321 ± 164 of 4 0.76Down
Ovary643 ± 54 of 4 1.50Up
Testis603 ± 94 of 4 1.40Up
Male accessory glands438 ± 74 of 4 1.00None
Virgin spermatheca238 ± 184 of 4 0.57Down
Mated spermatheca236 ± 104 of 4 0.56Down
Adult carcass270 ± 84 of 4 0.60Down
Larval CNS576 ± 124 of 4 1.37Up
Larval Salivary gland664 ± 84 of 4 1.57Up
Larval midgut491 ± 184 of 4 1.16None
Larval tubule804 ± 194 of 4 1.90Up
Larval hindgut440 ± 204 of 4 1.04None
Larval fat body703 ± 324 of 4 1.70Up
Larval trachea506 ± 214 of 4 1.20Up
Larval carcass465 ± 114 of 4 1.10None
S2 cells (growing)556 ± 84 of 4 1.32Up
Whole fly422 ± 224 of 4

Looking for CG7375-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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