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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7378-RA through 18771 annotations produced 1 hits



MKP-like (CG7378):

Annotation Number : CG7378
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030976
Gbrowse : chrX:18794442-18803330 (+) // 100.0 //
Probeset : 1628882_at
Accessions : protein= NP_001097027; /// NP_573341;, nucleotide= NM_001103557; /// NM_133113;
Interpro : 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/
FlyMine data for FBgn0030976.
BDGP gene expression has embryonic in situ data for CG7378: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0030976 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain274 ± 124 of 4 1.20None
Head302 ± 284 of 4 1.30None
Eye530 ± 244 of 4 2.24Up
Thoracicoabdominal ganglion242 ± 244 of 4 1.00None
Salivary gland77 ± 104 of 4 0.33Down
Crop637 ± 204 of 4 2.70Up
Midgut91 ± 24 of 4 0.40Down
Tubule30 ± 24 of 4 0.10Down
Hindgut434 ± 114 of 4 1.80Up
Heart252 ± 174 of 4 1.06None
Fat body29 ± 44 of 4 0.12Down
Ovary17 ± 14 of 4 0.10Down
Testis30 ± 04 of 4 0.10Down
Male accessory glands99 ± 34 of 4 0.40Down
Virgin spermatheca30 ± 34 of 4 0.13Down
Mated spermatheca43 ± 44 of 4 0.18Down
Adult carcass849 ± 264 of 4 3.60Up
Larval CNS53 ± 64 of 4 0.23Down
Larval Salivary gland13 ± 11 of 4 0.06Down
Larval midgut44 ± 24 of 4 0.19Down
Larval tubule16 ± 11 of 4 0.10Down
Larval hindgut158 ± 114 of 4 0.67Down
Larval fat body12 ± 31 of 4 0.10Down
Larval trachea29 ± 214 of 4 0.12Down
Larval carcass461 ± 214 of 4 1.95Up
S2 cells (growing)16 ± 00 of 4 0.07Down
Whole fly237 ± 214 of 4

Looking for CG7378-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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