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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7385-RA through 18771 annotations produced 1 hits



CG7385 (Ir76b):

Annotation Number : CG7385
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036937
Gbrowse : chr3L:20101883-20104537 (-) // 100.0 //
Probeset : 1633365_at
Accessions : protein= NP_649176;, nucleotide= NM_140919;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0036937.
Homophila reports that CG7385 is a close match (1e-12) to human gene GLUR3;GRIA3;MRX94 (NP_015564), a gene associated with Mental retardation, X-linked 94, 300699 (3).
VDRC has 1 RNAi stocks for FBgn0036937 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.40None
Head22 ± 13 of 4 4.30Up
Eye4 ± 10 of 4 0.92None
Thoracicoabdominal ganglion2 ± 10 of 4 0.50None
Salivary gland10 ± 40 of 4 2.07None
Crop3 ± 00 of 4 0.60None
Midgut3 ± 10 of 4 0.60None
Tubule1 ± 00 of 4 0.20Down
Hindgut5 ± 10 of 4 1.00None
Heart3 ± 10 of 4 0.65None
Fat body7 ± 20 of 4 1.36None
Ovary2 ± 00 of 4 0.40Down
Testis3 ± 10 of 4 0.70None
Male accessory glands8 ± 30 of 4 1.60None
Virgin spermatheca3 ± 10 of 4 0.57None
Mated spermatheca5 ± 00 of 4 1.04None
Adult carcass6 ± 20 of 4 1.20None
Larval CNS4 ± 20 of 4 0.77None
Larval Salivary gland7 ± 20 of 4 1.44None
Larval midgut3 ± 10 of 4 0.75None
Larval tubule2 ± 10 of 4 0.40None
Larval hindgut4 ± 10 of 4 0.80None
Larval fat body8 ± 20 of 4 1.50None
Larval trachea5 ± 30 of 4 0.98None
Larval carcass6 ± 10 of 4 1.20None
S2 cells (growing)2 ± 00 of 4 0.44Down
Whole fly5 ± 00 of 4

Looking for CG7385-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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