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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7386-RA through 18771 annotations produced 1 hits



(CG7386):

Annotation Number : CG7386
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035691
Gbrowse : chr3L:6182913-6184960 (+) // 100.0 //
Probeset : 1632810_at
Accessions : protein= NP_648036;, nucleotide= NM_139779;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0035691.
BDGP gene expression has embryonic in situ data for CG7386: 4 pix of staining in 1 body parts.
Homophila reports that CG7386 is a close match (9e-11) to human gene WT1 (NP_077743), a gene associated with Denys-Drash syndrome, 194080 (3);Frasier syndrome, 136680 (3);Mesangial sclerosis, isolated diffuse, 256370 (3);WAGR syndrome, 194072 (3);Wilms tumor, type 1, 194070 (3).
BioGrid reports that CG7386 interacts with CG7928 CG9927 CG7386 CG7761 CG7787 CG7911 CG8092 CG8120 CG8414 CG8611 CG8942 CG8965 CG9242 CG9636 CG9640 CG9797 .
VDRC has 2 RNAi stocks for FBgn0035691 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 04 of 4 0.70Down
Head13 20 of 4 0.50Down
Eye15 04 of 4 0.62Down
Thoracicoabdominal ganglion22 21 of 4 0.90None
Salivary gland14 40 of 4 0.61None
Crop13 20 of 4 0.50Down
Midgut14 20 of 4 0.60Down
Tubule8 10 of 4 0.30Down
Hindgut18 10 of 4 0.80Down
Heart10 13 of 4 0.41Down
Fat body20 40 of 4 0.83None
Ovary54 24 of 4 2.20Up
Testis58 44 of 4 2.40Up
Male accessory glands27 11 of 4 1.10None
Virgin spermatheca7 20 of 4 0.31Down
Mated spermatheca10 20 of 4 0.42Down
Adult carcass12 40 of 4 0.50None
Larval CNS20 14 of 4 0.81Down
Larval Salivary gland19 30 of 4 0.79None
Larval midgut15 10 of 4 0.64Down
Larval tubule11 20 of 4 0.50Down
Larval hindgut16 10 of 4 0.66Down
Larval fat body22 71 of 4 0.90None
Larval trachea19 34 of 4 0.79None
Larval carcass8 10 of 4 0.36Down
S2 cells (growing)19 11 of 4 0.80None
Whole fly24 14 of 4

Looking for CG7386-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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