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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7387-RA through 18771 annotations produced 1 hits



(CG7387):

Annotation Number : CG7387
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035852
Gbrowse : chr3L:8184611-8186216 (-) // 100.0 //
Probeset : 1633056_at
Accessions : protein= NP_648186;, nucleotide= NM_139929;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred f
FlyMine data for FBgn0035852.
BDGP gene expression has embryonic in situ data for CG7387: 4 pix of staining in 1 body parts.
BioGrid reports that CG7387 interacts with CG8714 CG8977 .
VDRC has 3 RNAi stocks for FBgn0035852 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye4 11 of 4 0.06Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland5 20 of 4 0.08Down
Crop7 20 of 4 0.10Down
Midgut2 00 of 4 0.00Down
Tubule5 10 of 4 0.10Down
Hindgut2 10 of 4 0.00Down
Heart2 10 of 4 0.03Down
Fat body2 10 of 4 0.03Down
Ovary3 10 of 4 0.10Down
Testis834 304 of 410.90Up
Male accessory glands13 41 of 4 0.20Down
Virgin spermatheca2 10 of 4 0.04Down
Mated spermatheca3 10 of 4 0.04Down
Adult carcass7 30 of 4 0.10Down
Larval CNS7 20 of 4 0.10Down
Larval Salivary gland2 00 of 4 0.03Down
Larval midgut3 10 of 4 0.05Down
Larval tubule1 10 of 4 0.00Down
Larval hindgut2 10 of 4 0.03Down
Larval fat body117 664 of 4 1.50None
Larval trachea3 41 of 4 0.04Down
Larval carcass3 10 of 4 0.04Down
S2 cells (growing)2 10 of 4 0.04Down
Whole fly76 54 of 4

Looking for CG7387-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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