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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7391-RA through 18771 annotations produced 1 hits



chr3L:7757070-7768703 (-) // 100.0 // (dclock):

Annotation Number : CG7391
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1631948_s_at
Accessions : protein= , nucleotide= NP_001014574; /// NP_001014576; /// NP_523964;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0
Interpro : DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic ann
FlyMine data for full length.
Homophila reports that CG7391 is a close match (1e-17) to human gene ECYT4;EPAS1;HIF2A;MOP2 (NP_001421), a gene associated with Erythrocytosis, familial, 4, 611783 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 ± 34 of 4 1.40None
Head34 ± 54 of 4 1.20None
Eye311 ± 694 of 410.50Up
Thoracicoabdominal ganglion42 ± 24 of 4 1.40Up
Salivary gland132 ± 304 of 4 4.47Up
Crop186 ± 74 of 4 6.30Up
Midgut87 ± 24 of 4 2.90Up
Tubule46 ± 24 of 4 1.60Up
Hindgut119 ± 24 of 4 4.00Up
Heart113 ± 24 of 4 3.82Up
Fat body81 ± 64 of 4 2.75Up
Ovary12 ± 00 of 4 0.40Down
Testis176 ± 44 of 4 5.90Up
Male accessory glands40 ± 44 of 4 1.40None
Virgin spermatheca42 ± 24 of 4 1.44Up
Mated spermatheca56 ± 14 of 4 1.91Up
Adult carcass63 ± 74 of 4 2.10Up
Larval CNS8 ± 11 of 4 0.27Down
Larval Salivary gland3 ± 10 of 4 0.11Down
Larval midgut1 ± 00 of 4 0.04Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut4 ± 00 of 4 0.14Down
Larval fat body15 ± 71 of 4 0.50None
Larval trachea6 ± 21 of 4 0.21Down
Larval carcass5 ± 00 of 4 0.18Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly29 ± 24 of 4

Looking for CG7391-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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