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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7399-RA through 18771 annotations produced 1 hits

Henna (Hn):

Annotation Number : CG7399
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001208
Gbrowse : chr3L:7753641-7756256 (+) // 100.0 //
Probeset : 1638325_at
Accessions : protein= NP_001014573; /// NP_523963;, nucleotide= NM_001014573; /// NM_079239;
Pathway : engulfment // inferred from mutant phenotype /// 0009072 // aromatic amino acid family metabolic process // inferred fr
Interpro : 0005811 // lipid particle // inferred from direct assay
FlyMine data for FBgn0001208.
BDGP gene expression has embryonic in situ data for Hn: 17 pix of staining in 2 body parts.
Homophila reports that CG7399 is a close match (7e-120) to human gene TH;TYH (NP_000351), a gene associated with Segawa syndrome, recessive (3).
BioGrid reports that CG7399 interacts with CG8189 CG9135 CG7552 CG7600 CG7807 CG8036 CG8881 .
TRiP has 1 RNAi stocks for FBgn0001208 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001208 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 34 of 4 0.10Down
Head2438 534 of 4 6.00Up
Eye1792 1814 of 4 4.40Up
Thoracicoabdominal ganglion41 14 of 4 0.10Down
Salivary gland11 50 of 4 0.03Down
Crop33 54 of 4 0.10Down
Midgut2 10 of 4 0.00Down
Tubule32 50 of 4 0.10Down
Hindgut105 54 of 4 0.30Down
Heart1324 914 of 4 3.25Up
Fat body2985 1264 of 4 7.33Up
Ovary3 11 of 4 0.00Down
Testis163 84 of 4 0.40Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca2908 1544 of 4 7.14Up
Mated spermatheca2022 1614 of 4 4.97Up
Adult carcass2151 774 of 4 5.30Up
Larval CNS1 00 of 4 0.00Down
Larval Salivary gland62 14 of 4 0.15Down
Larval midgut4 00 of 4 0.01Down
Larval tubule7 20 of 4 0.00Down
Larval hindgut39 54 of 4 0.10Down
Larval fat body5662 6034 of 413.90Up
Larval trachea72 344 of 4 0.18Down
Larval carcass518 1234 of 4 1.27None
S2 cells (growing)2 00 of 4 0.01Down
Whole fly407 404 of 4

Looking for CG7399-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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