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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7402-RA through 18771 annotations produced 1 hits



(CG7402):

Annotation Number : CG7402
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036768
Gbrowse : chr3L:17882448-17884454 (+) // 100.0 //
Probeset : 1641629_at
Accessions : protein= NP_649023;, nucleotide= NM_140766;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003943 // N-acetylgalactosamine-4-sulfatase ac
FlyMine data for FBgn0036768.
Homophila reports that CG7402 is a close match (7e-12) to human gene IDS;MPS2;SIDS (NP_000193), a gene associated with Mucopolysaccharidosis II (3).
VDRC has 2 RNAi stocks for FBgn0036768 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.20Down
Head47 54 of 4 3.20Up
Eye64 34 of 4 4.34Up
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland52 113 of 4 3.51Up
Crop2 00 of 4 0.10Down
Midgut19 30 of 4 1.30None
Tubule270 274 of 418.20Up
Hindgut39 64 of 4 2.70Up
Heart2 10 of 4 0.17Down
Fat body4 50 of 4 0.32Down
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.10Down
Male accessory glands2 10 of 4 0.20Down
Virgin spermatheca0 00 of 4 0.06Down
Mated spermatheca2 10 of 4 0.16Down
Adult carcass51 34 of 4 3.50Up
Larval CNS1 10 of 4 0.11Down
Larval Salivary gland127 354 of 4 8.62Up
Larval midgut7 20 of 4 0.48None
Larval tubule186 164 of 412.60Up
Larval hindgut23 34 of 4 1.60None
Larval fat body5 20 of 4 0.40Down
Larval trachea241 334 of 416.32Up
Larval carcass32 33 of 4 2.21Up
S2 cells (growing)0 00 of 4 0.06Down
Whole fly14 20 of 4

Looking for CG7402-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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