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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7405-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3L:21815100-21816499 (+) // 99.14 //):

Annotation Number : CG7405
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1640346_at
Accessions : protein= EC:2.7.1.-, nucleotide=
Interpro : 0006367 // transcription initiation from RNA polymerase II promoter // inferred from sequence or structural similarity /
BioGrid reports that CG7405 interacts with CG14119 CG5072 CG32045 CG7948 CG31811 CG18273 CG17964 CG13701 CG7296 CG15043 CG15676 CG2948 CG17508 CG5708 CG7281 CG2944 CG14816 CG5473 CG31000 CG5568 CG5731 CG4673 CG13900 CG1765 CG5003 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 24 of 4 0.20Down
Head49 ± 14 of 4 0.30Down
Eye77 ± 34 of 4 0.40Down
Thoracicoabdominal ganglion45 ± 04 of 4 0.20Down
Salivary gland83 ± 64 of 4 0.43Down
Crop84 ± 44 of 4 0.40Down
Midgut60 ± 51 of 4 0.30Down
Tubule62 ± 14 of 4 0.30Down
Hindgut60 ± 24 of 4 0.30Down
Heart69 ± 34 of 4 0.36Down
Fat body70 ± 114 of 4 0.36Down
Ovary405 ± 34 of 4 2.10Up
Testis119 ± 54 of 4 0.60Down
Male accessory glands80 ± 44 of 4 0.40Down
Virgin spermatheca72 ± 63 of 4 0.38Down
Mated spermatheca82 ± 44 of 4 0.42Down
Adult carcass51 ± 12 of 4 0.30Down
Larval CNS300 ± 114 of 4 1.55Up
Larval Salivary gland213 ± 114 of 4 1.10None
Larval midgut57 ± 23 of 4 0.29Down
Larval tubule111 ± 34 of 4 0.60Down
Larval hindgut108 ± 34 of 4 0.56Down
Larval fat body116 ± 64 of 4 0.60Down
Larval trachea281 ± 304 of 4 1.45Up
Larval carcass118 ± 64 of 4 0.61Down
S2 cells (growing)236 ± 34 of 4 1.22Up
Whole fly193 ± 14 of 4

Looking for CG7405-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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