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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7406-RA through 18771 annotations produced 1 hits



(CG7406):

Annotation Number : CG7406
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030980
Gbrowse : chrX:18971757-18972627 (+) // 100.0 //
Probeset : 1629975_at
Accessions : protein= NP_573345;, nucleotide= NM_133117;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030980.
VDRC has 1 RNAi stocks for FBgn0030980 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.40None
Head3 ± 00 of 4 0.60None
Eye2 ± 00 of 4 0.44None
Thoracicoabdominal ganglion6 ± 10 of 4 1.20None
Salivary gland3 ± 00 of 4 0.67None
Crop11 ± 20 of 4 2.00None
Midgut3 ± 10 of 4 0.60None
Tubule8 ± 00 of 4 1.40Up
Hindgut7 ± 00 of 4 1.30None
Heart3 ± 10 of 4 0.55None
Fat body4 ± 30 of 4 0.75None
Ovary2 ± 00 of 4 0.30None
Testis2 ± 00 of 4 0.40None
Male accessory glands2 ± 00 of 4 0.50None
Virgin spermatheca7 ± 10 of 4 1.32None
Mated spermatheca8 ± 10 of 4 1.53None
Adult carcass6 ± 20 of 4 1.10None
Larval CNS1 ± 10 of 4 0.34None
Larval Salivary gland5 ± 20 of 4 0.92None
Larval midgut11 ± 00 of 4 1.99None
Larval tubule5 ± 20 of 4 1.00None
Larval hindgut4 ± 10 of 4 0.75None
Larval fat body6 ± 30 of 4 1.10None
Larval trachea5 ± 30 of 4 0.97None
Larval carcass8 ± 20 of 4 1.52None
S2 cells (growing)1 ± 00 of 4 0.26None
Whole fly5 ± 20 of 4

Looking for CG7406-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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