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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7407-RA through 18771 annotations produced 1 hits



(CG7407):

Annotation Number : CG7407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037134
Gbrowse : chr3L:21816618-21817673 (+) // 100.0 //
Probeset : 1632663_at
Accessions : protein= NP_649364;, nucleotide= NM_141107;
FlyMine data for FBgn0037134.
BDGP gene expression has embryonic in situ data for CG7407: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037134 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain609 ± 154 of 4 3.50Up
Head248 ± 194 of 4 1.40Up
Eye320 ± 124 of 4 1.83Up
Thoracicoabdominal ganglion841 ± 334 of 4 4.80Up
Salivary gland209 ± 34 of 4 1.20None
Crop142 ± 24 of 4 0.80None
Midgut94 ± 24 of 4 0.50Down
Tubule112 ± 64 of 4 0.60Down
Hindgut125 ± 44 of 4 0.70Down
Heart168 ± 54 of 4 0.96None
Fat body130 ± 174 of 4 0.74Down
Ovary419 ± 184 of 4 2.40Up
Testis129 ± 44 of 4 0.70Down
Male accessory glands219 ± 44 of 4 1.30Up
Virgin spermatheca246 ± 174 of 4 1.41Up
Mated spermatheca242 ± 214 of 4 1.38Up
Adult carcass124 ± 44 of 4 0.70Down
Larval CNS180 ± 264 of 4 1.03None
Larval Salivary gland166 ± 34 of 4 0.95None
Larval midgut73 ± 04 of 4 0.42Down
Larval tubule216 ± 44 of 4 1.20None
Larval hindgut95 ± 34 of 4 0.55Down
Larval fat body174 ± 104 of 4 1.00None
Larval trachea136 ± 134 of 4 0.78None
Larval carcass77 ± 44 of 4 0.44Down
S2 cells (growing)66 ± 24 of 4 0.38Down
Whole fly174 ± 144 of 4

Looking for CG7407-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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