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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7408-RB through 18771 annotations produced 1 hits



(CG7408):

Annotation Number : CG7408
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036765
Gbrowse : chr3L:17872200-17876753 (+) // 100.0 //
Probeset : 1626665_at
Accessions : protein= NP_001163462; /// NP_001163463; /// NP_649020;, nucleotide= NM_001169991; /// NM_001169992; /// NM_140763;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003943 // N-acetylgalactosamine-4-sulfatase ac
FlyMine data for FBgn0036765.
Homophila reports that CG7408 is a close match (5e-11) to human gene IDS;MPS2;SIDS (NP_000193), a gene associated with Mucopolysaccharidosis II (3).
VDRC has 2 RNAi stocks for FBgn0036765 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 14 of 4 0.50Down
Head29 ± 14 of 4 1.50Up
Eye5 ± 01 of 4 0.27Down
Thoracicoabdominal ganglion13 ± 14 of 4 0.70None
Salivary gland403 ± 414 of 421.14Up
Crop204 ± 124 of 410.70Up
Midgut62 ± 54 of 4 3.30Up
Tubule207 ± 164 of 410.90Up
Hindgut130 ± 64 of 4 6.80Up
Heart41 ± 44 of 4 2.20Up
Fat body10 ± 34 of 4 0.54Down
Ovary4 ± 04 of 4 0.20Down
Testis1 ± 01 of 4 0.10Down
Male accessory glands9 ± 23 of 4 0.50Down
Virgin spermatheca16 ± 04 of 4 0.86None
Mated spermatheca15 ± 04 of 4 0.83None
Adult carcass21 ± 24 of 4 1.10None
Larval CNS20 ± 64 of 4 1.06None
Larval Salivary gland40 ± 24 of 4 2.14Up
Larval midgut130 ± 34 of 4 6.82Up
Larval tubule88 ± 64 of 4 4.60Up
Larval hindgut39 ± 14 of 4 2.09Up
Larval fat body14 ± 24 of 4 0.70None
Larval trachea6 ± 03 of 4 0.32Down
Larval carcass17 ± 34 of 4 0.94None
S2 cells (growing)9 ± 14 of 4 0.49Down
Whole fly19 ± 24 of 4

Looking for CG7408-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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