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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7413-RA through 18771 annotations produced 1 hits



Retinoblastoma-family protein (Rbf):

Annotation Number : CG7413
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015799
Gbrowse : chrX:691120-695490 (-) // 100.0 //
Probeset : 1623479_at
Accessions : protein= NP_525036;, nucleotide= NM_080297;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634
Interpro : 0003677 // DNA binding // non-traceable author statement /// 0003677 // DNA binding // inferred from electronic annotati
FlyMine data for FBgn0015799.
BDGP gene expression has embryonic in situ data for Rbf: 10 pix of staining in 11 body parts.
Homophila reports that CG7413 is a close match (2e-33) to human gene RB1 (NP_000312), a gene associated with Bladder cancer, 109800 (3);Osteosarcoma, 259500 (2);Pinealoma with bilateral retinoblastoma (2);Retinoblastoma (3).
BioGrid reports that CG7413 interacts with CG14026 CG2411 CG9096 CG9096 CG1772 CG1772 CG1772 CG1772 CG1772 CG1772 CG3938 CG4654 CG4654 CG6376 CG6376 CG6376 CG6376 CG5072 CG5072 CG5072 CG4654 CG4654 CG6376 CG6376 CG6376 CG6376 .
TRiP has 2 RNAi stocks for FBgn0015799 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015799 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 ± 34 of 4 0.80Down
Head45 ± 54 of 4 0.30Down
Eye35 ± 24 of 4 0.25Down
Thoracicoabdominal ganglion61 ± 54 of 4 0.40Down
Salivary gland80 ± 54 of 4 0.58Down
Crop33 ± 31 of 4 0.20Down
Midgut46 ± 34 of 4 0.30Down
Tubule51 ± 34 of 4 0.40Down
Hindgut40 ± 04 of 4 0.30Down
Heart30 ± 34 of 4 0.21Down
Fat body41 ± 44 of 4 0.29Down
Ovary381 ± 74 of 4 2.70Up
Testis83 ± 34 of 4 0.60Down
Male accessory glands45 ± 24 of 4 0.30Down
Virgin spermatheca33 ± 12 of 4 0.24Down
Mated spermatheca37 ± 44 of 4 0.27Down
Adult carcass50 ± 63 of 4 0.40Down
Larval CNS158 ± 94 of 4 1.13None
Larval Salivary gland136 ± 44 of 4 0.97None
Larval midgut57 ± 14 of 4 0.41Down
Larval tubule28 ± 24 of 4 0.20Down
Larval hindgut78 ± 54 of 4 0.56Down
Larval fat body32 ± 63 of 4 0.20Down
Larval trachea91 ± 54 of 4 0.65Down
Larval carcass82 ± 74 of 4 0.59Down
S2 cells (growing)144 ± 44 of 4 1.03None
Whole fly140 ± 84 of 4

Looking for CG7413-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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