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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7421-RA through 18771 annotations produced 1 hits



Nopp140 (Nopp140):

Annotation Number : CG7421
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037137
Gbrowse : chr3L:21825844-21829787 (+) // 100.0 //
Probeset : 1637060_a_at
Accessions : protein= NP_730693; /// NP_730694;, nucleotide= NM_168940; /// NM_168941;
Pathway : 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // traceable author sta
FlyMine data for FBgn0037137.
BDGP gene expression has embryonic in situ data for Nopp140: 18 pix of staining in 14 body parts.
BioGrid reports that CG7421 interacts with CG9027 .
TRiP has 1 RNAi stocks for FBgn0037137 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037137 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain100 84 of 4 0.20Down
Head124 114 of 4 0.30Down
Eye94 114 of 4 0.20Down
Thoracicoabdominal ganglion135 64 of 4 0.30Down
Salivary gland139 94 of 4 0.29Down
Crop218 194 of 4 0.40Down
Midgut215 104 of 4 0.40Down
Tubule133 294 of 4 0.30Down
Hindgut132 64 of 4 0.30Down
Heart160 194 of 4 0.33Down
Fat body338 364 of 4 0.70Down
Ovary1207 134 of 4 2.50Up
Testis60 34 of 4 0.10Down
Male accessory glands482 144 of 4 1.00None
Virgin spermatheca153 114 of 4 0.32Down
Mated spermatheca231 144 of 4 0.47Down
Adult carcass134 34 of 4 0.30Down
Larval CNS779 414 of 4 1.60Up
Larval Salivary gland493 574 of 4 1.01None
Larval midgut233 304 of 4 0.48Down
Larval tubule65 54 of 4 0.10Down
Larval hindgut390 604 of 4 0.80None
Larval fat body72 44 of 4 0.10Down
Larval trachea514 594 of 4 1.06None
Larval carcass590 1404 of 4 1.21None
S2 cells (growing)603 94 of 4 1.24Up
Whole fly486 204 of 4

Looking for CG7421-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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