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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7427-RA through 18771 annotations produced 1 hits



(CG7427):

Annotation Number : CG7427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036510
Gbrowse : chr3L:15556537-15558662 (+) // 100.0 //
Probeset : 1627254_at
Accessions : protein= NP_648777;, nucleotide= NM_140520;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0043130 // ubiquitin binding // inferred from seque
FlyMine data for FBgn0036510.
VDRC has 2 RNAi stocks for FBgn0036510 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain236 ± 64 of 4 1.20Up
Head157 ± 94 of 4 0.80Down
Eye215 ± 64 of 4 1.14Up
Thoracicoabdominal ganglion287 ± 74 of 4 1.50Up
Salivary gland262 ± 184 of 4 1.39Up
Crop177 ± 94 of 4 0.90None
Midgut100 ± 54 of 4 0.50Down
Tubule140 ± 34 of 4 0.70Down
Hindgut163 ± 54 of 4 0.90Down
Heart185 ± 54 of 4 0.98None
Fat body159 ± 154 of 4 0.84Down
Ovary258 ± 54 of 4 1.40Up
Testis184 ± 114 of 4 1.00None
Male accessory glands157 ± 114 of 4 0.80None
Virgin spermatheca201 ± 114 of 4 1.07None
Mated spermatheca202 ± 64 of 4 1.07None
Adult carcass166 ± 94 of 4 0.90None
Larval CNS254 ± 74 of 4 1.35Up
Larval Salivary gland152 ± 64 of 4 0.81Down
Larval midgut106 ± 44 of 4 0.56Down
Larval tubule163 ± 54 of 4 0.90Down
Larval hindgut191 ± 44 of 4 1.01None
Larval fat body143 ± 84 of 4 0.80Down
Larval trachea201 ± 164 of 4 1.07None
Larval carcass181 ± 94 of 4 0.96None
S2 cells (growing)160 ± 14 of 4 0.85Down
Whole fly189 ± 64 of 4

Looking for CG7427-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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