Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7428-RA through 18771 annotations produced 1 hits



halo (halo):

Annotation Number : CG7428
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001174
Gbrowse : chr2L:1517531-1518184 (-) // 100.0 //
Probeset : 1633058_at
Accessions : protein= NP_001137765; /// NP_608604;, nucleotide= NM_001144293; /// NM_134760;
FlyMine data for FBgn0001174.
VDRC has 3 RNAi stocks for FBgn0001174 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 1.10None
Head5 ± 11 of 4 1.20None
Eye4 ± 10 of 4 0.92None
Thoracicoabdominal ganglion2 ± 00 of 4 0.40Down
Salivary gland8 ± 40 of 4 1.82None
Crop11 ± 10 of 4 2.60Up
Midgut9 ± 21 of 4 2.00None
Tubule6 ± 00 of 4 1.50Up
Hindgut7 ± 10 of 4 1.60None
Heart2 ± 00 of 4 0.60None
Fat body8 ± 03 of 4 1.87Up
Ovary3 ± 10 of 4 0.80None
Testis3 ± 00 of 4 0.70None
Male accessory glands8 ± 00 of 4 1.80Up
Virgin spermatheca6 ± 00 of 4 1.47None
Mated spermatheca5 ± 11 of 4 1.19None
Adult carcass10 ± 10 of 4 2.30Up
Larval CNS7 ± 04 of 4 1.72Up
Larval Salivary gland1 ± 00 of 4 0.38Down
Larval midgut8 ± 20 of 4 1.92None
Larval tubule7 ± 22 of 4 1.60None
Larval hindgut7 ± 04 of 4 1.51None
Larval fat body6 ± 21 of 4 1.50None
Larval trachea2 ± 30 of 4 0.47None
Larval carcass2 ± 10 of 4 0.45None
S2 cells (growing)3 ± 00 of 4 0.82None
Whole fly4 ± 01 of 4

Looking for CG7428-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime