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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7429-RA through 18771 annotations produced 1 hits



(CG7429):

Annotation Number : CG7429
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031979
Gbrowse : chr2L:8041114-8041867 (+) // 100.0 //
Probeset : 1630997_at
Accessions : protein= NP_609178;, nucleotide= NM_135334;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031979.
BDGP gene expression has embryonic in situ data for CG7429: 4 pix of staining in 1 body parts.
BioGrid reports that CG7429 interacts with CG9951 .
VDRC has 3 RNAi stocks for FBgn0031979 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 ± 24 of 4 0.60Down
Head53 ± 14 of 4 0.70Down
Eye56 ± 14 of 4 0.78Down
Thoracicoabdominal ganglion49 ± 24 of 4 0.70Down
Salivary gland65 ± 64 of 4 0.90None
Crop88 ± 24 of 4 1.20Up
Midgut73 ± 54 of 4 1.00None
Tubule42 ± 24 of 4 0.60Down
Hindgut66 ± 34 of 4 0.90None
Heart73 ± 44 of 4 1.02None
Fat body63 ± 54 of 4 0.87Down
Ovary105 ± 54 of 4 1.40Up
Testis104 ± 24 of 4 1.40Up
Male accessory glands134 ± 14 of 4 1.90Up
Virgin spermatheca47 ± 04 of 4 0.65Down
Mated spermatheca52 ± 44 of 4 0.72Down
Adult carcass57 ± 24 of 4 0.80Down
Larval CNS43 ± 54 of 4 0.59Down
Larval Salivary gland68 ± 44 of 4 0.94None
Larval midgut62 ± 14 of 4 0.86Down
Larval tubule78 ± 34 of 4 1.10None
Larval hindgut55 ± 34 of 4 0.76Down
Larval fat body70 ± 34 of 4 1.00None
Larval trachea70 ± 64 of 4 0.97None
Larval carcass61 ± 24 of 4 0.85Down
S2 cells (growing)32 ± 14 of 4 0.45Down
Whole fly72 ± 14 of 4

Looking for CG7429-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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