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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7432-RA through 18771 annotations produced 1 hits



(CG7432):

Annotation Number : CG7432
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038727
Gbrowse : chr3R:15493461-15496369 (+) // 100.0 //
Probeset : 1641225_at
Accessions : protein= NP_650825;, nucleotide= NM_142568;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038727.
Homophila reports that CG7432 is a close match (3e-14) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).
VDRC has 1 RNAi stocks for FBgn0038727 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 02 of 4 0.60None
Head9 13 of 4 0.90None
Eye4 11 of 4 0.46Down
Thoracicoabdominal ganglion12 22 of 4 1.20None
Salivary gland28 33 of 4 2.76Up
Crop12 23 of 4 1.20None
Midgut17 20 of 4 1.70None
Tubule9 02 of 4 0.90None
Hindgut10 04 of 4 1.00None
Heart4 10 of 4 0.48Down
Fat body12 32 of 4 1.26None
Ovary6 02 of 4 0.60Down
Testis8 12 of 4 0.80None
Male accessory glands11 01 of 4 1.10None
Virgin spermatheca12 13 of 4 1.19None
Mated spermatheca12 04 of 4 1.22Up
Adult carcass16 12 of 4 1.60Up
Larval CNS7 04 of 4 0.76Down
Larval Salivary gland11 12 of 4 1.12None
Larval midgut17 12 of 4 1.72Up
Larval tubule12 13 of 4 1.20None
Larval hindgut16 14 of 4 1.58Up
Larval fat body15 14 of 4 1.50Up
Larval trachea38 64 of 4 3.75Up
Larval carcass22 03 of 4 2.19Up
S2 cells (growing)8 03 of 4 0.88None
Whole fly10 01 of 4

Looking for CG7432-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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