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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7433-RB through 18771 annotations produced 1 hits



(CG7433):

Annotation Number : CG7433
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036927
Gbrowse : chr3L:19990810-19993786 (-) // 100.0 //
Probeset : 1626489_s_at
Accessions : protein= NP_001163479; /// NP_649168; /// NP_730476;, nucleotide= NM_001170008; /// NM_140911; /// NM_168829;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // infer
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003867 // 4-aminobutyrate transaminase activit
FlyMine data for FBgn0036927.
BDGP gene expression has embryonic in situ data for CG7433: 51 pix of staining in 21 body parts.
Homophila reports that CG7433 is a close match (3e-14) to human gene OAT (NP_000265), a gene associated with Gyrate atrophy of choroid and retina with ornithinemia, B6 responsive or unresponsive (3).
TRiP has 1 RNAi stocks for FBgn0036927 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036927 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain173 ± 154 of 412.20Up
Head68 ± 84 of 4 4.90Up
Eye32 ± 44 of 4 2.32Up
Thoracicoabdominal ganglion337 ± 84 of 423.80Up
Salivary gland9 ± 20 of 4 0.67None
Crop5 ± 22 of 4 0.40None
Midgut14 ± 14 of 4 1.00None
Tubule76 ± 24 of 4 5.40Up
Hindgut8 ± 14 of 4 0.60None
Heart8 ± 04 of 4 0.56None
Fat body10 ± 14 of 4 0.72None
Ovary6 ± 14 of 4 0.50None
Testis2 ± 01 of 4 0.20None
Male accessory glands6 ± 10 of 4 0.40None
Virgin spermatheca8 ± 03 of 4 0.61None
Mated spermatheca7 ± 03 of 4 0.54None
Adult carcass16 ± 13 of 4 1.20None
Larval CNS146 ± 244 of 410.35Up
Larval Salivary gland6 ± 13 of 4 0.48None
Larval midgut21 ± 24 of 4 1.49None
Larval tubule18 ± 24 of 4 1.30None
Larval hindgut7 ± 04 of 4 0.50None
Larval fat body8 ± 22 of 4 0.60None
Larval trachea4 ± 22 of 4 0.33None
Larval carcass5 ± 01 of 4 0.37None
S2 cells (growing)6 ± 04 of 4 0.43None
Whole fly14 ± 44 of 4

Looking for CG7433-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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