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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7438-RA through 18771 annotations produced 1 hits



Myosin IA (Myo31DF):

Annotation Number : CG7438
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086347
Gbrowse : chr2L:10491681-10506780 (-) // 100.0 //
Probeset : 1641074_s_at
Accessions : protein= NP_523538; /// NP_723596;, nucleotide= NM_078814; /// NM_164933;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from ele
FlyMine data for FBgn0086347.
Homophila reports that CG7438 is a close match (1e-89) to human gene CELIAC4;MYO9B;MYR5 (NP_004136), a gene associated with {Celiac disease, susceptibility to, 4}, 609753 (3).
TRiP has 1 RNAi stocks for FBgn0086347 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086347 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 54 of 4 0.30Down
Head137 94 of 4 0.60Down
Eye61 44 of 4 0.26Down
Thoracicoabdominal ganglion122 104 of 4 0.50Down
Salivary gland135 84 of 4 0.58Down
Crop400 104 of 4 1.70Up
Midgut1378 254 of 4 5.90Up
Tubule182 164 of 4 0.80Down
Hindgut447 124 of 4 1.90Up
Heart198 504 of 4 0.85None
Fat body95 104 of 4 0.41Down
Ovary261 14 of 4 1.10None
Testis113 64 of 4 0.50Down
Male accessory glands101 194 of 4 0.40Down
Virgin spermatheca101 94 of 4 0.43Down
Mated spermatheca185 254 of 4 0.79None
Adult carcass126 74 of 4 0.50Down
Larval CNS134 94 of 4 0.57Down
Larval Salivary gland956 144 of 4 4.10Up
Larval midgut1934 1884 of 4 8.28Up
Larval tubule748 554 of 4 3.20Up
Larval hindgut642 324 of 4 2.75Up
Larval fat body80 34 of 4 0.30Down
Larval trachea447 214 of 4 1.92Up
Larval carcass405 144 of 4 1.74Up
S2 cells (growing)636 364 of 4 2.72Up
Whole fly233 144 of 4

Looking for CG7438-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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